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  5. Gb_02290

Gb_02290


Description : HCF173 protein involved in PS-II assembly


Gene families : OG0005568 (Archaeplastida) Phylogenetic Tree(s): OG0005568_tree ,
OG_05_0006382 (LandPlants) Phylogenetic Tree(s): OG_05_0006382_tree ,
OG_06_0007345 (SeedPlants) Phylogenetic Tree(s): OG_06_0007345_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_02290
Cluster HCCA: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
AT1G16720 HCF173 high chlorophyll fluorescence phenotype 173 0.06 Archaeplastida
Cpa|evm.model.tig00020830.55 No alias No description available 0.02 Archaeplastida
Cre13.g578650 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
GSVIVT01029443001 No alias Photosynthesis.photophosphorylation.photosystem... 0.05 Archaeplastida
LOC_Os02g04510.1 No alias HCF173 protein involved in PS-II assembly 0.06 Archaeplastida
LOC_Os06g49120.1 No alias HCF173 protein involved in PS-II assembly 0.03 Archaeplastida
MA_21385g0010 No alias no hits & (original description: none) 0.07 Archaeplastida
MA_937923g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
Mp3g04800.1 No alias HCF173 protein involved in PS-II assembly 0.03 Archaeplastida
Pp3c25_2890V3.1 No alias high chlorophyll fluorescence phenotype 173 0.04 Archaeplastida
Solyc08g016080.3.1 No alias HCF173 protein involved in PS-II assembly 0.04 Archaeplastida
Zm00001e013206_P002 No alias HCF173 protein involved in PS-II assembly 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005381 iron ion transmembrane transporter activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006099 tricarboxylic acid cycle IEP Neighborhood
BP GO:0006101 citrate metabolic process IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006720 isoprenoid metabolic process IEP Neighborhood
BP GO:0006826 iron ion transport IEP Neighborhood
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
BP GO:0008299 isoprenoid biosynthetic process IEP Neighborhood
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
MF GO:0015035 protein disulfide oxidoreductase activity IEP Neighborhood
MF GO:0015036 disulfide oxidoreductase activity IEP Neighborhood
BP GO:0015977 carbon fixation IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Neighborhood
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016791 phosphatase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016831 carboxy-lyase activity IEP Neighborhood
BP GO:0016999 antibiotic metabolic process IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0034755 iron ion transmembrane transport IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
MF GO:0046422 violaxanthin de-epoxidase activity IEP Neighborhood
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
BP GO:0072350 tricarboxylic acid metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR016040 NAD(P)-bd_dom 151 226
IPR016040 NAD(P)-bd_dom 451 532
IPR013857 NADH-UbQ_OxRdtase-assoc_prot30 292 394
No external refs found!