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  5. Gb_02379

Gb_02379


Description : Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana (sp|q9shz8|pp168_arath : 660.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000075 (LandPlants) Phylogenetic Tree(s): OG_05_0000075_tree ,
OG_06_0000024 (SeedPlants) Phylogenetic Tree(s): OG_06_0000024_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_02379
Cluster HCCA: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01000244001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
GSVIVT01003957001 No alias Pentatricopeptide repeat-containing protein At5g65570... 0.02 Archaeplastida
GSVIVT01004939001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
GSVIVT01007937001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.04 Archaeplastida
GSVIVT01008173001 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.03 Archaeplastida
GSVIVT01009866001 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.04 Archaeplastida
GSVIVT01010125001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
GSVIVT01011501001 No alias Pentatricopeptide repeat-containing protein At5g39350... 0.08 Archaeplastida
GSVIVT01011735001 No alias Pentatricopeptide repeat-containing protein At2g01510,... 0.05 Archaeplastida
GSVIVT01017209001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01018098001 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.08 Archaeplastida
GSVIVT01021023001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
GSVIVT01021246001 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
GSVIVT01021268001 No alias Pentatricopeptide repeat-containing protein At4g18840... 0.03 Archaeplastida
GSVIVT01021756001 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.02 Archaeplastida
GSVIVT01022230001 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.04 Archaeplastida
GSVIVT01022894001 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.03 Archaeplastida
GSVIVT01023644001 No alias Pentatricopeptide repeat-containing protein At4g30700... 0.03 Archaeplastida
GSVIVT01023971001 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.03 Archaeplastida
GSVIVT01024493001 No alias Pentatricopeptide repeat-containing protein At4g39952,... 0.05 Archaeplastida
GSVIVT01025639001 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.2 Archaeplastida
GSVIVT01026141001 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
GSVIVT01027839001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
GSVIVT01029347001 No alias Putative pentatricopeptide repeat-containing protein... 0.1 Archaeplastida
GSVIVT01030080001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01030248001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
GSVIVT01032394001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.03 Archaeplastida
GSVIVT01032994001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
GSVIVT01033304001 No alias Pentatricopeptide repeat-containing protein At2g02980,... 0.06 Archaeplastida
GSVIVT01033837001 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
GSVIVT01036511001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01036943001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.05 Archaeplastida
GSVIVT01037332001 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.04 Archaeplastida
GSVIVT01037562001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
MA_10429540g0010 No alias Pentatricopeptide repeat-containing protein At4g14850... 0.03 Archaeplastida
MA_10432670g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_122899g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
MA_141034g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_185098g0010 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.04 Archaeplastida
MA_442926g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_66417g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.06 Archaeplastida
MA_8868720g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida
MA_921g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.14 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 242 270
IPR032867 DYW_dom 680 804
IPR002885 Pentatricopeptide_repeat 584 605
IPR002885 Pentatricopeptide_repeat 480 504
IPR002885 Pentatricopeptide_repeat 142 189
IPR002885 Pentatricopeptide_repeat 506 555
IPR002885 Pentatricopeptide_repeat 405 453
IPR002885 Pentatricopeptide_repeat 274 319
No external refs found!