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  5. Gb_02487

Gb_02487


Description : cohesin cofactor (PDS5)


Gene families : OG0000410 (Archaeplastida) Phylogenetic Tree(s): OG0000410_tree ,
OG_05_0022086 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0021483 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_02487
Cluster HCCA: Cluster_324

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00213120 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.sister chromatid... 0.03 Archaeplastida
AT1G77600 No alias ARM repeat superfamily protein 0.04 Archaeplastida
AT4G31880 No alias LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant... 0.04 Archaeplastida
AT5G47690 No alias binding 0.05 Archaeplastida
Cpa|evm.model.tig00000076.96 No alias No description available 0.01 Archaeplastida
GSVIVT01023587001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.03 Archaeplastida
GSVIVT01035890001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.04 Archaeplastida
MA_10433886g0010 No alias cohesin cofactor (PDS5) 0.04 Archaeplastida
MA_10434304g0010 No alias cohesin cofactor (PDS5) 0.02 Archaeplastida
MA_10434588g0010 No alias cohesin cofactor (PDS5) 0.03 Archaeplastida
MA_25261g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Pp3c10_24900V3.1 No alias binding 0.02 Archaeplastida
Pp3c23_10270V3.1 No alias binding 0.04 Archaeplastida
Solyc06g065710.3.1 No alias cohesin cofactor (PDS5) 0.04 Archaeplastida
Solyc11g012770.2.1 No alias cohesin cofactor (PDS5) 0.04 Archaeplastida
Zm00001e015094_P002 No alias cohesin cofactor (PDS5) 0.03 Archaeplastida
Zm00001e030989_P001 No alias cohesin cofactor (PDS5) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004819 glutamine-tRNA ligase activity IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006425 glutaminyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!