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  5. Gb_03136

Gb_03136


Description : Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana (sp|q9zuw3|pp172_arath : 668.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_03136
Cluster HCCA: Cluster_229

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00032p00029450 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g20770... 0.03 Archaeplastida
GSVIVT01000072001 No alias Pentatricopeptide repeat-containing protein At3g05340... 0.03 Archaeplastida
GSVIVT01008721001 No alias Pentatricopeptide repeat-containing protein At5g40410,... 0.03 Archaeplastida
GSVIVT01010647001 No alias Pentatricopeptide repeat-containing protein At2g22410,... 0.03 Archaeplastida
GSVIVT01016860001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
GSVIVT01016874001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.03 Archaeplastida
GSVIVT01024588001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.03 Archaeplastida
GSVIVT01031265001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.03 Archaeplastida
Gb_00852 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
Gb_02060 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_03263 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
Gb_04080 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_04417 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.04 Archaeplastida
Gb_04419 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_05883 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.06 Archaeplastida
Gb_06560 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.04 Archaeplastida
Gb_08118 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.04 Archaeplastida
Gb_10709 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_12372 No alias RNA editing factor (OTP82) 0.09 Archaeplastida
Gb_12555 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 Archaeplastida
Gb_14403 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.08 Archaeplastida
Gb_14445 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_17382 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.03 Archaeplastida
Gb_20547 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.07 Archaeplastida
Gb_21430 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Gb_21714 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_22740 No alias Pentatricopeptide repeat-containing protein At1g15510,... 0.04 Archaeplastida
Gb_23089 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
Gb_23126 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_23924 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_28030 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.05 Archaeplastida
Gb_29868 No alias RNA editing factor (OTP82) 0.05 Archaeplastida
Gb_30991 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Gb_31498 No alias RNA editing factor (MEF19) 0.03 Archaeplastida
Gb_34963 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_36398 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_38297 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_38750 No alias RNA editing factor (OTP82) 0.05 Archaeplastida
Gb_39560 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida
Gb_40040 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.04 Archaeplastida
Gb_40437 No alias RNA editing factor (MEF3) 0.04 Archaeplastida
LOC_Os04g57940.1 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
LOC_Os06g12510.1 No alias Pentatricopeptide repeat-containing protein At5g15300... 0.03 Archaeplastida
LOC_Os11g10740.1 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.03 Archaeplastida
LOC_Os12g06070.1 No alias Pentatricopeptide repeat-containing protein At5g04780,... 0.02 Archaeplastida
MA_101084g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_10214098g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
MA_10257685g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
MA_10426261g0020 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
MA_10427342g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
MA_10429371g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.05 Archaeplastida
MA_10429540g0010 No alias Pentatricopeptide repeat-containing protein At4g14850... 0.06 Archaeplastida
MA_10429837g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_10432670g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_10435641g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_10436764g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_104937g0010 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.03 Archaeplastida
MA_106123g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_107356g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
MA_1109g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.07 Archaeplastida
MA_112066g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_112594g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
MA_11454g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.05 Archaeplastida
MA_114722g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_11765g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
MA_117676g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_119635g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
MA_121267g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_124907g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.07 Archaeplastida
MA_13057g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_136188g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_136326g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
MA_138190g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_140591g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_141731g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_14938g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_16226g0010 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.03 Archaeplastida
MA_1673g0010 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.04 Archaeplastida
MA_17949g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_183278g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.05 Archaeplastida
MA_185098g0010 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.07 Archaeplastida
MA_20599g0020 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.05 Archaeplastida
MA_20899g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_22485g0010 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.02 Archaeplastida
MA_2473g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
MA_25584g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
MA_305950g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_30632g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_322292g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
MA_33151g0010 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.05 Archaeplastida
MA_3449g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 Archaeplastida
MA_3471g0010 No alias RNA editing factor (MEF19) 0.05 Archaeplastida
MA_356g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_39263g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida
MA_412g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
MA_43727g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
MA_445076g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
MA_483636g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
MA_50118g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_502206g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.03 Archaeplastida
MA_50789g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 Archaeplastida
MA_519985g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_52613g0020 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_55967g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_56322g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_57048g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.06 Archaeplastida
MA_59148g0010 No alias RNA editing factor (MEF11) 0.06 Archaeplastida
MA_61422g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_62181g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
MA_632994g0010 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.04 Archaeplastida
MA_656915g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
MA_683665g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_68707g0010 No alias RNA editing factor (MEF1) 0.04 Archaeplastida
MA_703619g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_75255g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
MA_7691g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 Archaeplastida
MA_778985g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
MA_805687g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida
MA_812716g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
MA_81436g0010 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.04 Archaeplastida
MA_8491g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_8607116g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.03 Archaeplastida
MA_86739g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_86894g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
MA_90090g0010 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.07 Archaeplastida
MA_921g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
MA_95261g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_96662g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
Smo428483 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Zm00001e035764_P001 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.03 Archaeplastida
Zm00001e036647_P001 No alias Pentatricopeptide repeat-containing protein At5g08510... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 268 313
IPR002885 Pentatricopeptide_repeat 368 414
IPR002885 Pentatricopeptide_repeat 570 617
IPR002885 Pentatricopeptide_repeat 166 213
IPR002885 Pentatricopeptide_repeat 645 669
IPR002885 Pentatricopeptide_repeat 710 739
IPR002885 Pentatricopeptide_repeat 472 500
IPR002885 Pentatricopeptide_repeat 241 263
IPR002885 Pentatricopeptide_repeat 544 569
IPR002885 Pentatricopeptide_repeat 444 469
IPR032867 DYW_dom 743 866
No external refs found!