Gb_03162

Description : Putative pentatricopeptide repeat-containing protein At1g09680 OS=Arabidopsis thaliana (sp|o04491|ppr26_arath : 508.0)

Gene families : OG0010041 (Archaeplastida) Phylogenetic Tree(s): OG0010041_tree ,
OG_05_0009710 (LandPlants) Phylogenetic Tree(s): OG_05_0009710_tree ,
OG_06_0008177 (SeedPlants) Phylogenetic Tree(s): OG_06_0008177_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_03162
Cluster	HCCA: Cluster_4

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00060p00141630	evm_27.TU.AmTr_v1...	Putative pentatricopeptide repeat-containing protein...	0.07	Archaeplastida
LOC_Os04g38930.1	No alias	Putative pentatricopeptide repeat-containing protein...	0.05	Archaeplastida
Zm00001e007886_P001	No alias	Putative pentatricopeptide repeat-containing protein...	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Neighborhood
MF	GO:0004527	exonuclease activity	IEP	Neighborhood
BP	GO:0006260	DNA replication	IEP	Neighborhood
MF	GO:0008408	3'-5' exonuclease activity	IEP	Neighborhood
MF	GO:0016779	nucleotidyltransferase activity	IEP	Neighborhood
MF	GO:0034061	DNA polymerase activity	IEP	Neighborhood
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	461	509
IPR002885	Pentatricopeptide_repeat	219	264
IPR002885	Pentatricopeptide_repeat	390	439
IPR002885	Pentatricopeptide_repeat	320	369
IPR002885	Pentatricopeptide_repeat	530	579
IPR002885	Pentatricopeptide_repeat	130	156
IPR002885	Pentatricopeptide_repeat	184	213
IPR002885	Pentatricopeptide_repeat	281	314

External Links

No external refs found!