AT2G18510 (emb2444)

Aliases : emb2444

Description : RNA-binding (RRM/RBD/RNP motifs) family protein

Gene families : OG0005566 (Archaeplastida) Phylogenetic Tree(s): OG0005566_tree ,
OG_05_0007023 (LandPlants) Phylogenetic Tree(s): OG_05_0007023_tree ,
OG_06_0009824 (SeedPlants) Phylogenetic Tree(s): OG_06_0009824_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G18510
Cluster	HCCA: Cluster_80

Target	Alias	Description	ECC score	Gene Family Method	Actions
Cpa\|evm.model.tig00001029.19	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.01	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	NAS	Interproscan
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044428	nuclear part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000059	obsolete protein import into nucleus, docking	IEP	Neighborhood
BP	GO:0000278	mitotic cell cycle	IEP	Neighborhood
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	Neighborhood
BP	GO:0000741	karyogamy	IEP	Neighborhood
BP	GO:0000904	cell morphogenesis involved in differentiation	IEP	Neighborhood
CC	GO:0000932	P-body	IEP	Neighborhood
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Neighborhood
MF	GO:0003882	CDP-diacylglycerol-serine O-phosphatidyltransferase activity	IEP	Neighborhood
MF	GO:0004712	protein serine/threonine/tyrosine kinase activity	IEP	Neighborhood
MF	GO:0004713	protein tyrosine kinase activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
MF	GO:0005527	macrolide binding	IEP	Neighborhood
MF	GO:0005528	FK506 binding	IEP	Neighborhood
CC	GO:0005635	nuclear envelope	IEP	Neighborhood
CC	GO:0005643	nuclear pore	IEP	Neighborhood
CC	GO:0005789	endoplasmic reticulum membrane	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006406	mRNA export from nucleus	IEP	Neighborhood
BP	GO:0006486	protein glycosylation	IEP	Neighborhood
BP	GO:0006487	protein N-linked glycosylation	IEP	Neighborhood
BP	GO:0006497	protein lipidation	IEP	Neighborhood
BP	GO:0006498	N-terminal protein lipidation	IEP	Neighborhood
BP	GO:0006499	N-terminal protein myristoylation	IEP	Neighborhood
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Neighborhood
BP	GO:0006611	protein export from nucleus	IEP	Neighborhood
BP	GO:0006658	phosphatidylserine metabolic process	IEP	Neighborhood
BP	GO:0006659	phosphatidylserine biosynthetic process	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0006913	nucleocytoplasmic transport	IEP	Neighborhood
BP	GO:0007049	cell cycle	IEP	Neighborhood
BP	GO:0009826	unidimensional cell growth	IEP	Neighborhood
BP	GO:0009846	pollen germination	IEP	Neighborhood
BP	GO:0009860	pollen tube growth	IEP	Neighborhood
BP	GO:0009932	cell tip growth	IEP	Neighborhood
BP	GO:0010603	regulation of cytoplasmic mRNA processing body assembly	IEP	Neighborhood
BP	GO:0010606	positive regulation of cytoplasmic mRNA processing body assembly	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
MF	GO:0016780	phosphotransferase activity, for other substituted phosphate groups	IEP	Neighborhood
MF	GO:0016859	cis-trans isomerase activity	IEP	Neighborhood
BP	GO:0017148	negative regulation of translation	IEP	Neighborhood
MF	GO:0017169	CDP-alcohol phosphatidyltransferase activity	IEP	Neighborhood
BP	GO:0018208	peptidyl-proline modification	IEP	Neighborhood
BP	GO:0018377	protein myristoylation	IEP	Neighborhood
BP	GO:0019722	calcium-mediated signaling	IEP	Neighborhood
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	Neighborhood
MF	GO:0031072	heat shock protein binding	IEP	Neighborhood
BP	GO:0031087	deadenylation-independent decapping of nuclear-transcribed mRNA	IEP	Neighborhood
BP	GO:0031365	N-terminal protein amino acid modification	IEP	Neighborhood
MF	GO:0032266	phosphatidylinositol-3-phosphate binding	IEP	Neighborhood
BP	GO:0033962	cytoplasmic mRNA processing body assembly	IEP	Neighborhood
BP	GO:0034249	negative regulation of cellular amide metabolic process	IEP	Neighborhood
BP	GO:0034605	cellular response to heat	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0034976	response to endoplasmic reticulum stress	IEP	Neighborhood
MF	GO:0035091	phosphatidylinositol binding	IEP	Neighborhood
MF	GO:0035197	siRNA binding	IEP	Neighborhood
CC	GO:0035770	ribonucleoprotein granule	IEP	Neighborhood
CC	GO:0036464	cytoplasmic ribonucleoprotein granule	IEP	Neighborhood
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	Neighborhood
MF	GO:0042802	identical protein binding	IEP	Neighborhood
MF	GO:0042803	protein homodimerization activity	IEP	Neighborhood
BP	GO:0042938	dipeptide transport	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
BP	GO:0043413	macromolecule glycosylation	IEP	Neighborhood
BP	GO:0043543	protein acylation	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
MF	GO:0046983	protein dimerization activity	IEP	Neighborhood
BP	GO:0048284	organelle fusion	IEP	Neighborhood
BP	GO:0048588	developmental cell growth	IEP	Neighborhood
BP	GO:0051028	mRNA transport	IEP	Neighborhood
BP	GO:0051168	nuclear export	IEP	Neighborhood
BP	GO:0051169	nuclear transport	IEP	Neighborhood
MF	GO:0051879	Hsp90 protein binding	IEP	Neighborhood
MF	GO:0061980	regulatory RNA binding	IEP	Neighborhood
BP	GO:0070085	glycosylation	IEP	Neighborhood
BP	GO:0070370	cellular heat acclimation	IEP	Neighborhood
BP	GO:0070925	organelle assembly	IEP	Neighborhood
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	Neighborhood
CC	GO:0071944	cell periphery	IEP	Neighborhood
MF	GO:0080025	phosphatidylinositol-3,5-bisphosphate binding	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEP	Neighborhood
MF	GO:1901981	phosphatidylinositol phosphate binding	IEP	Neighborhood
BP	GO:1902115	regulation of organelle assembly	IEP	Neighborhood
BP	GO:1902117	positive regulation of organelle assembly	IEP	Neighborhood
MF	GO:1902936	phosphatidylinositol bisphosphate binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	27	97
IPR000504	RRM_dom	114	184

External Links

No external refs found!

AT2G18510 (emb2444)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation