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  5. Gb_03499

Gb_03499


Description : 5-3 exoribonuclease 3 OS=Arabidopsis thaliana (sp|q9fq03|xrn3_arath : 529.0)


Gene families : OG0000811 (Archaeplastida) Phylogenetic Tree(s): OG0000811_tree ,
OG_05_0000830 (LandPlants) Phylogenetic Tree(s): OG_05_0000830_tree ,
OG_06_0002236 (SeedPlants) Phylogenetic Tree(s): OG_06_0002236_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_03499
Cluster HCCA: Cluster_290

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021720.19 No alias 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.01 Archaeplastida
Cre06.g280050 No alias 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.01 Archaeplastida
MA_1082858g0010 No alias 5-3 exoribonuclease 3 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_17503g0010 No alias 5-3 exoribonuclease 3 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Mp3g08820.1 No alias exoribonuclease (RAT1/XRN2) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004527 exonuclease activity IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005216 ion channel activity IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006623 protein targeting to vacuole IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0016567 protein ubiquitination IEP Neighborhood
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
MF GO:0022838 substrate-specific channel activity IEP Neighborhood
BP GO:0032446 protein modification by small protein conjugation IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
MF GO:0061630 ubiquitin protein ligase activity IEP Neighborhood
MF GO:0061659 ubiquitin-like protein ligase activity IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072665 protein localization to vacuole IEP Neighborhood
BP GO:0072666 establishment of protein localization to vacuole IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 279 293
IPR004859 Put_53exo 1 269
No external refs found!