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  5. Gb_03748

Gb_03748


Description : no hits & (original description: none)


Gene families : OG0002375 (Archaeplastida) Phylogenetic Tree(s): OG0002375_tree ,
OG_05_0005839 (LandPlants) Phylogenetic Tree(s): OG_05_0005839_tree ,
OG_06_0007554 (SeedPlants) Phylogenetic Tree(s): OG_06_0007554_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_03748
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00083380 evm_27.TU.AmTr_v1... No description available 0.1 Archaeplastida
AT5G23110 No alias Zinc finger, C3HC4 type (RING finger) family protein 0.15 Archaeplastida
Cpa|evm.model.tig00000615.2 No alias No description available 0.03 Archaeplastida
Cre01.g044850 No alias No description available 0.03 Archaeplastida
GSVIVT01012044001 No alias No description available 0.06 Archaeplastida
MA_10436421g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_29192g0010 No alias no hits & (original description: none) 0.14 Archaeplastida
Mp5g01480.1 No alias no hits & (original description: none) 0.11 Archaeplastida
Pp3c9_15860V3.1 No alias Zinc finger, C3HC4 type (RING finger) family protein 0.03 Archaeplastida
Solyc02g014180.2.1 No alias no hits & (original description: none) 0.09 Archaeplastida
Solyc02g014190.4.1 No alias no hits & (original description: none) 0.11 Archaeplastida
Zm00001e006551_P001 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0017069 snRNA binding IEP Neighborhood
MF GO:0017070 U6 snRNA binding IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0030623 U5 snRNA binding IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!