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  5. Gb_03798

Gb_03798


Description : RNA helicase (Prp5)


Gene families : OG0005527 (Archaeplastida) Phylogenetic Tree(s): OG0005527_tree ,
OG_05_0005768 (LandPlants) Phylogenetic Tree(s): OG_05_0005768_tree ,
OG_06_0007757 (SeedPlants) Phylogenetic Tree(s): OG_06_0007757_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_03798
Cluster HCCA: Cluster_303

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000204.43 No alias RNA processing.RNA splicing.spliceosome... 0.02 Archaeplastida
Cre16.g676400 No alias RNA processing.RNA splicing.spliceosome... 0.01 Archaeplastida
GSVIVT01023849001 No alias DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis thaliana 0.05 Archaeplastida
Mp1g06750.1 No alias RNA helicase (Prp5) 0.04 Archaeplastida
Solyc12g098700.1.1 No alias RNA helicase (Prp5) 0.05 Archaeplastida
Zm00001e040204_P001 No alias RNA helicase (Prp5) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 771 879
IPR011545 DEAD/DEAH_box_helicase_dom 562 733
No external refs found!