Gb_03920

Description : transcription factor (SBP)

Gene families : OG0000102 (Archaeplastida) Phylogenetic Tree(s): OG0000102_tree ,
OG_05_0000092 (LandPlants) Phylogenetic Tree(s): OG_05_0000092_tree ,
OG_06_0000075 (SeedPlants) Phylogenetic Tree(s): OG_06_0000075_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_03920
Cluster	HCCA: Cluster_298

Target	Alias	Description	ECC score	Gene Family Method
AT1G27360	SPL11	squamosa promoter-like 11	0.03	Archaeplastida
AT3G60030	SPL12	squamosa promoter-binding protein-like 12	0.03	Archaeplastida
Cre16.g692500	No alias	RNA biosynthesis.transcriptional activation.SBP...	0.01	Archaeplastida
LOC_Os08g39890.1	No alias	transcription factor (SBP)	0.03	Archaeplastida
LOC_Os09g31438.1	No alias	transcription factor (SBP)	0.03	Archaeplastida
MA_10428252g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_383231g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
Mp1g10020.1	No alias	transcription factor (SBP)	0.02	Archaeplastida
Mp1g10030.1	No alias	transcription factor (SBP)	0.02	Archaeplastida
Pp3c13_17220V3.1	No alias	No annotation	0.03	Archaeplastida
Solyc02g077920.4.1	No alias	transcription factor (SBP)	0.02	Archaeplastida
Solyc10g009080.4.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e010067_P001	No alias	transcription factor (SBP)	0.03	Archaeplastida
Zm00001e025110_P001	No alias	transcription factor (SBP)	0.02	Archaeplastida
Zm00001e041822_P001	No alias	transcription factor (SBP)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0033643	host cell part	None	Extended
CC	GO:0033646	host intracellular part	None	Extended
CC	GO:0033647	host intracellular organelle	None	Extended
CC	GO:0033648	host intracellular membrane-bounded organelle	None	Extended
CC	GO:0042025	host cell nucleus	IEA	Interproscan
CC	GO:0044217	other organism part	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEP	Neighborhood
MF	GO:0001871	pattern binding	IEP	Neighborhood
MF	GO:0030246	carbohydrate binding	IEP	Neighborhood
MF	GO:0030247	polysaccharide binding	IEP	Neighborhood
BP	GO:0035556	intracellular signal transduction	IEP	Neighborhood
MF	GO:2001070	starch binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR004333	SBP_dom	249	322

External Links

No external refs found!