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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG0002673 (Archaeplastida) Phylogenetic Tree(s): OG0002673_tree ,
OG_05_0001952 (LandPlants) Phylogenetic Tree(s): OG_05_0001952_tree ,
OG_06_0001479 (SeedPlants) Phylogenetic Tree(s): OG_06_0001479_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AT2G18940 | |
| Cluster | HCCA: Cluster_76 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| MA_96691g0010 | No alias | plastidial mRNA processing factor (PPR10) | 0.03 | Archaeplastida | |
| Solyc07g017760.1.1 | No alias | plastidial mRNA processing factor (PPR10) | 0.02 | Archaeplastida | |
| Zm00001e035434_P001 | No alias | plastidial mRNA processing factor (PPR10) | 0.05 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0005739 | mitochondrion | ISM | Interproscan |
| BP | GO:0008150 | biological_process | ND | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000373 | Group II intron splicing | IEP | Neighborhood |
| BP | GO:0003006 | developmental process involved in reproduction | IEP | Neighborhood |
| MF | GO:0004808 | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity | IEP | Neighborhood |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Neighborhood |
| MF | GO:0004816 | asparagine-tRNA ligase activity | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006417 | regulation of translation | IEP | Neighborhood |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Neighborhood |
| BP | GO:0006421 | asparaginyl-tRNA aminoacylation | IEP | Neighborhood |
| BP | GO:0006949 | syncytium formation | IEP | Neighborhood |
| MF | GO:0008173 | RNA methyltransferase activity | IEP | Neighborhood |
| MF | GO:0008175 | tRNA methyltransferase activity | IEP | Neighborhood |
| CC | GO:0009507 | chloroplast | IEP | Neighborhood |
| CC | GO:0009528 | plastid inner membrane | IEP | Neighborhood |
| CC | GO:0009536 | plastid | IEP | Neighborhood |
| BP | GO:0009657 | plastid organization | IEP | Neighborhood |
| BP | GO:0009658 | chloroplast organization | IEP | Neighborhood |
| CC | GO:0009706 | chloroplast inner membrane | IEP | Neighborhood |
| BP | GO:0010020 | chloroplast fission | IEP | Neighborhood |
| BP | GO:0010098 | suspensor development | IEP | Neighborhood |
| BP | GO:0010118 | stomatal movement | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Neighborhood |
| CC | GO:0031300 | intrinsic component of organelle membrane | IEP | Neighborhood |
| CC | GO:0031301 | integral component of organelle membrane | IEP | Neighborhood |
| CC | GO:0031350 | intrinsic component of plastid membrane | IEP | Neighborhood |
| CC | GO:0031351 | integral component of plastid membrane | IEP | Neighborhood |
| CC | GO:0031352 | intrinsic component of plastid inner membrane | IEP | Neighborhood |
| CC | GO:0031353 | integral component of plastid inner membrane | IEP | Neighborhood |
| CC | GO:0031356 | intrinsic component of chloroplast inner membrane | IEP | Neighborhood |
| CC | GO:0031357 | integral component of chloroplast inner membrane | IEP | Neighborhood |
| BP | GO:0032502 | developmental process | IEP | Neighborhood |
| BP | GO:0034248 | regulation of cellular amide metabolic process | IEP | Neighborhood |
| BP | GO:0034622 | cellular protein-containing complex assembly | IEP | Neighborhood |
| BP | GO:0043038 | amino acid activation | IEP | Neighborhood |
| BP | GO:0043039 | tRNA aminoacylation | IEP | Neighborhood |
| BP | GO:0043572 | plastid fission | IEP | Neighborhood |
| MF | GO:0043621 | protein self-association | IEP | Neighborhood |
| BP | GO:0045292 | mRNA cis splicing, via spliceosome | IEP | Neighborhood |
| BP | GO:0048316 | seed development | IEP | Neighborhood |
| BP | GO:0048564 | photosystem I assembly | IEP | Neighborhood |
| BP | GO:0048856 | anatomical structure development | IEP | Neighborhood |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Neighborhood |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 734 | 783 |
| IPR002885 | Pentatricopeptide_repeat | 525 | 573 |
| IPR002885 | Pentatricopeptide_repeat | 419 | 466 |
| IPR002885 | Pentatricopeptide_repeat | 350 | 397 |
| IPR002885 | Pentatricopeptide_repeat | 197 | 258 |
| IPR002885 | Pentatricopeptide_repeat | 268 | 328 |
| IPR002885 | Pentatricopeptide_repeat | 623 | 678 |
| IPR002885 | Pentatricopeptide_repeat | 697 | 728 |
| IPR002885 | Pentatricopeptide_repeat | 486 | 518 |
| No external refs found! |