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  5. Gb_04028

Gb_04028


Description : Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana (sp|q9lfl5|pp390_arath : 605.0)


Gene families : OG0009682 (Archaeplastida) Phylogenetic Tree(s): OG0009682_tree ,
OG_05_0061190 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0054489 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_04028
Cluster HCCA: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
Gb_14728 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 Archaeplastida
Gb_30098 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.05 Archaeplastida
MA_20206g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 380 427
IPR002885 Pentatricopeptide_repeat 275 311
IPR002885 Pentatricopeptide_repeat 617 664
IPR002885 Pentatricopeptide_repeat 173 221
IPR002885 Pentatricopeptide_repeat 515 564
IPR002885 Pentatricopeptide_repeat 757 786
IPR002885 Pentatricopeptide_repeat 483 512
IPR002885 Pentatricopeptide_repeat 347 377
IPR002885 Pentatricopeptide_repeat 453 481
IPR002885 Pentatricopeptide_repeat 312 342
IPR002885 Pentatricopeptide_repeat 692 715
IPR032867 DYW_dom 790 913
No external refs found!