Gb_04606

Description : component RPS2 of SSU proteome

Gene families : OG0001651 (Archaeplastida) Phylogenetic Tree(s): OG0001651_tree ,
OG_05_0001448 (LandPlants) Phylogenetic Tree(s): OG_05_0001448_tree ,
OG_06_0001471 (SeedPlants) Phylogenetic Tree(s): OG_06_0001471_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_04606
Cluster	HCCA: Cluster_309

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00212950	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	Archaeplastida
AT1G58684	No alias	Ribosomal protein S5 family protein	0.02	Archaeplastida
AT1G58983	No alias	Ribosomal protein S5 family protein	0.02	Archaeplastida
AT1G59359	No alias	Ribosomal protein S5 family protein	0.02	Archaeplastida
AT2G41840	No alias	Ribosomal protein S5 family protein	0.07	Archaeplastida
Cpa\|evm.model.tig00020961.135	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	Archaeplastida
Cre01.g039250	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	Archaeplastida
GSVIVT01033299001	No alias	40S ribosomal protein S2-4 OS=Arabidopsis thaliana	0.03	Archaeplastida
LOC_Os03g59310.1	No alias	component RPS2 of SSU proteome	0.04	Archaeplastida
LOC_Os07g10660.1	No alias	component RPS2 of SSU proteome	0.04	Archaeplastida
MA_158470g0010	No alias	component RPS2 of SSU proteome	0.04	Archaeplastida
Mp5g15970.1	No alias	component RPS2 of SSU proteome	0.05	Archaeplastida
Pp3c20_18740V3.1	No alias	Ribosomal protein S5 family protein	0.05	Archaeplastida
Pp3c23_8410V3.1	No alias	Ribosomal protein S5 family protein	0.04	Archaeplastida
Pp3c24_5780V3.1	No alias	Ribosomal protein S5 family protein	0.06	Archaeplastida
Smo67484	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	Archaeplastida
Solyc04g063290.3.1	No alias	component RPS2 of SSU proteome	0.05	Archaeplastida
Solyc04g074300.3.1	No alias	component RPS2 of SSU proteome	0.07	Archaeplastida
Zm00001e006090_P001	No alias	component RPS2 of SSU proteome	0.04	Archaeplastida
Zm00001e011816_P001	No alias	component RPS2 of SSU proteome	0.03	Archaeplastida
Zm00001e033091_P001	No alias	no hits & (original description: none)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000075	cell cycle checkpoint	IEP	Neighborhood
BP	GO:0000077	DNA damage checkpoint	IEP	Neighborhood
BP	GO:0001522	pseudouridine synthesis	IEP	Neighborhood
MF	GO:0003697	single-stranded DNA binding	IEP	Neighborhood
MF	GO:0003746	translation elongation factor activity	IEP	Neighborhood
BP	GO:0006334	nucleosome assembly	IEP	Neighborhood
BP	GO:0006414	translational elongation	IEP	Neighborhood
MF	GO:0008097	5S rRNA binding	IEP	Neighborhood
BP	GO:0009451	RNA modification	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
CC	GO:0030896	checkpoint clamp complex	IEP	Neighborhood
BP	GO:0031570	DNA integrity checkpoint	IEP	Neighborhood
BP	GO:0034728	nucleosome organization	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
CC	GO:0044454	nuclear chromosome part	IEP	Neighborhood
BP	GO:0045786	negative regulation of cell cycle	IEP	Neighborhood
BP	GO:0048519	negative regulation of biological process	IEP	Neighborhood
BP	GO:0048523	negative regulation of cellular process	IEP	Neighborhood
BP	GO:0051726	regulation of cell cycle	IEP	Neighborhood
BP	GO:0065004	protein-DNA complex assembly	IEP	Neighborhood
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR005324	Ribosomal_S5_C	169	240
IPR013810	Ribosomal_S5_N	86	150

External Links

No external refs found!

Gb_04606

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation