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  5. AT1G08880

AT1G08880 (GAMMA-H2AX, HTA5,...)


Aliases : GAMMA-H2AX, HTA5, G-H2AX, H2AXA

Description : Histone superfamily protein


Gene families : OG0000174 (Archaeplastida) Phylogenetic Tree(s): OG0000174_tree ,
OG_05_0000204 (LandPlants) Phylogenetic Tree(s): OG_05_0000204_tree ,
OG_06_0000166 (SeedPlants) Phylogenetic Tree(s): OG_06_0000166_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G08880
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00221900 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.08 Archaeplastida
AMTR_s00057p00215390 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
AMTR_s00058p00158560 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.07 Archaeplastida
AMTR_s00115p00128810 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.12 Archaeplastida
AMTR_s00168p00048800 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g264750 No alias Chromatin organisation.histones.H2A-type histone 0.25 Archaeplastida
Cre06.g264950 No alias Chromatin organisation.histones.H2A-type histone 0.23 Archaeplastida
Cre06.g265350 No alias Chromatin organisation.histones.H2A-type histone 0.2 Archaeplastida
Cre06.g266700 No alias Chromatin organisation.histones.H2A-type histone 0.31 Archaeplastida
Cre06.g268050 No alias Chromatin organisation.histones.H2A-type histone 0.27 Archaeplastida
Cre06.g268300 No alias Chromatin organisation.histones.H2A-type histone 0.27 Archaeplastida
Cre06.g271350 No alias Chromatin organisation.histones.H2A-type histone 0.31 Archaeplastida
Cre06.g273900 No alias Chromatin organisation.histones.H2A-type histone 0.31 Archaeplastida
Cre06.g274200 No alias Chromatin organisation.histones.H2A-type histone 0.31 Archaeplastida
Cre06.g274800 No alias Chromatin organisation.histones.H2A-type histone 0.25 Archaeplastida
Cre06.g275850 No alias Chromatin organisation.histones.H2A-type histone 0.33 Archaeplastida
Cre06.g276500 No alias Chromatin organisation.histones.H2A-type histone 0.29 Archaeplastida
Cre06.g276950 No alias Chromatin organisation.histones.H2A-type histone 0.31 Archaeplastida
Cre12.g504500 No alias Chromatin organisation.histones.H2A-type histone 0.25 Archaeplastida
Cre12.g504750 No alias Chromatin organisation.histones.H2A-type histone 0.31 Archaeplastida
Cre12.g505550 No alias Chromatin organisation.histones.H2A-type histone 0.31 Archaeplastida
Cre12.g506250 No alias Chromatin organisation.histones.H2A-type histone 0.31 Archaeplastida
Cre13.g570100 No alias Chromatin organisation.histones.H2A-type histone 0.25 Archaeplastida
Cre13.g590800 No alias Chromatin organisation.histones.H2A-type histone 0.09 Archaeplastida
Cre13.g591150 No alias Chromatin organisation.histones.H2A-type histone 0.1 Archaeplastida
Cre17.g708550 No alias Chromatin organisation.histones.H2A-type histone 0.31 Archaeplastida
Cre17.g709200 No alias Chromatin organisation.histones.H2A-type histone 0.31 Archaeplastida
Cre17.g710400 No alias Chromatin organisation.histones.H2A-type histone 0.25 Archaeplastida
Cre17.g711700 No alias Chromatin organisation.histones.H2A-type histone 0.33 Archaeplastida
Cre17.g713400 No alias Chromatin organisation.histones.H2A-type histone 0.31 Archaeplastida
Cre17.g714500 No alias Chromatin organisation.histones.H2A-type histone 0.33 Archaeplastida
GSVIVT01011034001 No alias Chromatin organisation.histones.H2A-type histone 0.12 Archaeplastida
GSVIVT01014580001 No alias Chromatin organisation.histones.H2A-type histone 0.17 Archaeplastida
GSVIVT01031123001 No alias Chromatin organisation.histones.H2A-type histone 0.08 Archaeplastida
Gb_06384 No alias histone (H2A) 0.29 Archaeplastida
Gb_07070 No alias histone (H2A) 0.18 Archaeplastida
Gb_12570 No alias histone (H2A) 0.06 Archaeplastida
Gb_25326 No alias histone (H2A) 0.1 Archaeplastida
Gb_29778 No alias histone (H2A) 0.05 Archaeplastida
Gb_34906 No alias histone (H2A) 0.03 Archaeplastida
Gb_37579 No alias histone (H2A) 0.09 Archaeplastida
Gb_39944 No alias histone (H2A) 0.04 Archaeplastida
LOC_Os03g17100.1 No alias histone (H2A) 0.05 Archaeplastida
LOC_Os05g02300.1 No alias histone (H2A) 0.16 Archaeplastida
LOC_Os05g38640.1 No alias histone (H2A) 0.03 Archaeplastida
LOC_Os07g36130.1 No alias histone (H2A) 0.09 Archaeplastida
LOC_Os07g36140.1 No alias histone (H2A) 0.14 Archaeplastida
LOC_Os08g33100.1 No alias histone (H2A) 0.19 Archaeplastida
LOC_Os12g25120.1 No alias histone (H2A) 0.09 Archaeplastida
MA_10425800g0010 No alias histone (H2A) 0.03 Archaeplastida
MA_10426943g0010 No alias histone (H2A) 0.07 Archaeplastida
MA_169054g0020 No alias histone (H2A) 0.2 Archaeplastida
MA_213048g0010 No alias histone (H2A) 0.14 Archaeplastida
MA_22203g0020 No alias histone (H2A) 0.14 Archaeplastida
MA_427046g0010 No alias histone (H2A) 0.15 Archaeplastida
MA_7320190g0010 No alias histone (H2A) 0.04 Archaeplastida
MA_74667g0010 No alias histone (H2A) 0.04 Archaeplastida
MA_962778g0010 No alias histone (H2A) 0.11 Archaeplastida
Mp2g00760.1 No alias histone (H2A) 0.04 Archaeplastida
Mp3g00840.1 No alias histone (H2A) 0.06 Archaeplastida
Mp3g02370.1 No alias histone (H2A) 0.02 Archaeplastida
Pp3c5_1791V3.1 No alias histone H2A 10 0.11 Archaeplastida
Pp3c5_1800V3.1 No alias histone H2A 10 0.07 Archaeplastida
Pp3c6_29410V3.1 No alias histone H2A 10 0.05 Archaeplastida
Smo166626 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Smo170948 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Smo73637 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Smo76653 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Solyc01g099410.3.1 No alias histone (H2A) 0.06 Archaeplastida
Solyc03g005220.4.1 No alias histone (H2A) 0.07 Archaeplastida
Solyc06g084430.4.1 No alias histone (H2A) 0.4 Archaeplastida
Solyc09g010400.3.1 No alias histone (H2A) 0.12 Archaeplastida
Solyc09g074300.1.1 No alias histone (H2A) 0.33 Archaeplastida
Solyc09g082710.3.1 No alias histone (H2A) 0.03 Archaeplastida
Solyc10g006560.4.1 No alias histone (H2A) 0.1 Archaeplastida
Solyc11g073250.2.1 No alias histone (H2A) 0.12 Archaeplastida
Solyc11g073260.2.1 No alias histone (H2A) 0.12 Archaeplastida
Solyc12g005270.2.1 No alias histone (H2A) 0.27 Archaeplastida
Zm00001e010232_P001 No alias histone (H2A) 0.1 Archaeplastida
Zm00001e010515_P001 No alias histone (H2A) 0.11 Archaeplastida
Zm00001e010516_P001 No alias histone (H2A) 0.06 Archaeplastida
Zm00001e011643_P001 No alias histone (H2A) 0.06 Archaeplastida
Zm00001e012144_P001 No alias histone (H2A) 0.12 Archaeplastida
Zm00001e020483_P001 No alias histone (H2A) 0.05 Archaeplastida
Zm00001e033014_P001 No alias histone (H2A) 0.05 Archaeplastida
Zm00001e034815_P001 No alias histone (H2A) 0.12 Archaeplastida
Zm00001e035183_P002 No alias histone (H2A) 0.14 Archaeplastida
Zm00001e038465_P002 No alias histone (H2A) 0.1 Archaeplastida
Zm00001e039735_P001 No alias histone (H2A) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0005372 water transmembrane transporter activity IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007020 microtubule nucleation IEP Neighborhood
BP GO:0008283 cell proliferation IEP Neighborhood
CC GO:0009579 thylakoid IEP Neighborhood
MF GO:0015250 water channel activity IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 17 96
IPR032454 Histone_H2A_C 99 132
No external refs found!