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Gb_04917


Description : UBP1-associated protein 2C OS=Arabidopsis thaliana (sp|q9lka4|uba2c_arath : 289.0)


Gene families : OG0000953 (Archaeplastida) Phylogenetic Tree(s): OG0000953_tree ,
OG_05_0000628 (LandPlants) Phylogenetic Tree(s): OG_05_0000628_tree ,
OG_06_0000928 (SeedPlants) Phylogenetic Tree(s): OG_06_0000928_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_04917
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01037491001 No alias UBP1-associated protein 2A OS=Arabidopsis thaliana 0.04 Archaeplastida
MA_129986g0010 No alias UBP1-associated protein 2B OS=Arabidopsis thaliana... 0.06 Archaeplastida
MA_158497g0010 No alias UBP1-associated protein 2C OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_287080g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_3634858g0010 No alias UBP1-associated protein 2C OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_8212g0010 No alias UBP1-associated protein 2C OS=Arabidopsis thaliana... 0.04 Archaeplastida
Smo163608 No alias UBP1-associated protein 2C OS=Arabidopsis thaliana 0.03 Archaeplastida
Solyc01g008970.4.1 No alias UBP1-associated protein 2A OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc02g021560.4.1 No alias UBP1-associated protein 2C OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc12g014210.3.1 No alias UBP1-associated protein 2C OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e020692_P003 No alias UBP1-associated protein 2C OS=Arabidopsis thaliana... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004576 oligosaccharyl transferase activity IEP Neighborhood
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008175 tRNA methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 156 222
IPR000504 RRM_dom 65 131
No external refs found!