AT2G20180 (PIL5, PIF1)

Aliases : PIL5, PIF1

Description : phytochrome interacting factor 3-like 5

Gene families : OG0015599 (Archaeplastida) Phylogenetic Tree(s): OG0015599_tree ,
OG_05_0015472 (LandPlants) Phylogenetic Tree(s): OG_05_0015472_tree ,
OG_06_0015205 (SeedPlants) Phylogenetic Tree(s): OG_06_0015205_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G20180
Cluster	HCCA: Cluster_87

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IDA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IDA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	TAS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IMP	Interproscan
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006720	isoprenoid metabolic process	None	Extended
BP	GO:0006721	terpenoid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006778	porphyrin-containing compound metabolic process	None	Extended
BP	GO:0006779	porphyrin-containing compound biosynthetic process	None	Extended
BP	GO:0006783	heme biosynthetic process	IMP	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008299	isoprenoid biosynthetic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009606	tropism	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009629	response to gravity	None	Extended
BP	GO:0009630	gravitropism	None	Extended
BP	GO:0009639	response to red or far red light	None	Extended
BP	GO:0009685	gibberellin metabolic process	None	Extended
BP	GO:0009686	gibberellin biosynthetic process	IMP	Interproscan
BP	GO:0009686	gibberellin biosynthetic process	RCA	Interproscan
BP	GO:0009740	gibberellic acid mediated signaling pathway	IMP	Interproscan
BP	GO:0009740	gibberellic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009845	seed germination	RCA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009959	negative gravitropism	IMP	Interproscan
BP	GO:0009959	negative gravitropism	TAS	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010017	red or far-red light signaling pathway	None	Extended
BP	GO:0010029	regulation of seed germination	TAS	Interproscan
BP	GO:0010099	regulation of photomorphogenesis	TAS	Interproscan
BP	GO:0010100	negative regulation of photomorphogenesis	IMP	Interproscan
BP	GO:0010114	response to red light	None	Extended
BP	GO:0010161	red light signaling pathway	IDA	Interproscan
BP	GO:0010187	negative regulation of seed germination	IMP	Interproscan
BP	GO:0010187	negative regulation of seed germination	IGI	Interproscan
MF	GO:0010313	phytochrome binding	IDA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010476	gibberellin mediated signaling pathway	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010817	regulation of hormone levels	None	Extended
BP	GO:0015994	chlorophyll metabolic process	None	Extended
BP	GO:0015995	chlorophyll biosynthetic process	IMP	Interproscan
BP	GO:0016053	organic acid biosynthetic process	None	Extended
BP	GO:0016101	diterpenoid metabolic process	None	Extended
BP	GO:0016102	diterpenoid biosynthetic process	None	Extended
BP	GO:0016114	terpenoid biosynthetic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033013	tetrapyrrole metabolic process	None	Extended
BP	GO:0033014	tetrapyrrole biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042168	heme metabolic process	None	Extended
BP	GO:0042440	pigment metabolic process	None	Extended
BP	GO:0042445	hormone metabolic process	None	Extended
BP	GO:0042446	hormone biosynthetic process	None	Extended
MF	GO:0042802	identical protein binding	IPI	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046148	pigment biosynthetic process	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048581	negative regulation of post-embryonic development	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0048608	reproductive structure development	RCA	Interproscan
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051093	negative regulation of developmental process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051186	cofactor metabolic process	None	Extended
BP	GO:0051188	cofactor biosynthetic process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051241	negative regulation of multicellular organismal process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071214	cellular response to abiotic stimulus	None	Extended
BP	GO:0071478	cellular response to radiation	None	Extended
BP	GO:0071482	cellular response to light stimulus	None	Extended
BP	GO:0071489	cellular response to red or far red light	None	Extended
BP	GO:0071491	cellular response to red light	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0104004	cellular response to environmental stimulus	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1900140	regulation of seedling development	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000030	regulation of response to red or far red light	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003725	double-stranded RNA binding	IEP	Neighborhood
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0003841	1-acylglycerol-3-phosphate O-acyltransferase activity	IEP	Neighborhood
MF	GO:0004028	3-chloroallyl aldehyde dehydrogenase activity	IEP	Neighborhood
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
MF	GO:0004784	superoxide dismutase activity	IEP	Neighborhood
CC	GO:0005773	vacuole	IEP	Neighborhood
CC	GO:0005777	peroxisome	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006633	fatty acid biosynthetic process	IEP	Neighborhood
BP	GO:0006790	sulfur compound metabolic process	IEP	Neighborhood
BP	GO:0006793	phosphorus metabolic process	IEP	Neighborhood
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006801	superoxide metabolic process	IEP	Neighborhood
MF	GO:0008146	sulfotransferase activity	IEP	Neighborhood
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Neighborhood
BP	GO:0008356	asymmetric cell division	IEP	Neighborhood
MF	GO:0008886	glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	IEP	Neighborhood
BP	GO:0009411	response to UV	IEP	Neighborhood
BP	GO:0009637	response to blue light	IEP	Neighborhood
BP	GO:0009638	phototropism	IEP	Neighborhood
BP	GO:0009644	response to high light intensity	IEP	Neighborhood
BP	GO:0009657	plastid organization	IEP	Neighborhood
BP	GO:0009658	chloroplast organization	IEP	Neighborhood
BP	GO:0009668	plastid membrane organization	IEP	Neighborhood
MF	GO:0009672	auxin:proton symporter activity	IEP	Neighborhood
BP	GO:0009785	blue light signaling pathway	IEP	Neighborhood
BP	GO:0009825	multidimensional cell growth	IEP	Neighborhood
MF	GO:0009881	photoreceptor activity	IEP	Neighborhood
MF	GO:0009882	blue light photoreceptor activity	IEP	Neighborhood
CC	GO:0009898	cytoplasmic side of plasma membrane	IEP	Neighborhood
BP	GO:0009902	chloroplast relocation	IEP	Neighborhood
BP	GO:0009903	chloroplast avoidance movement	IEP	Neighborhood
BP	GO:0009904	chloroplast accumulation movement	IEP	Neighborhood
BP	GO:0009958	positive gravitropism	IEP	Neighborhood
BP	GO:0009965	leaf morphogenesis	IEP	Neighborhood
CC	GO:0009986	cell surface	IEP	Neighborhood
BP	GO:0010027	thylakoid membrane organization	IEP	Neighborhood
BP	GO:0010082	regulation of root meristem growth	IEP	Neighborhood
BP	GO:0010155	regulation of proton transport	IEP	Neighborhood
BP	GO:0010162	seed dormancy process	IEP	Neighborhood
MF	GO:0010181	FMN binding	IEP	Neighborhood
BP	GO:0010218	response to far red light	IEP	Neighborhood
BP	GO:0010229	inflorescence development	IEP	Neighborhood
BP	GO:0010315	auxin efflux	IEP	Neighborhood
BP	GO:0010359	regulation of anion channel activity	IEP	Neighborhood
BP	GO:0010360	negative regulation of anion channel activity	IEP	Neighborhood
BP	GO:0010361	regulation of anion channel activity by blue light	IEP	Neighborhood
BP	GO:0010362	negative regulation of anion channel activity by blue light	IEP	Neighborhood
BP	GO:0010422	regulation of brassinosteroid biosynthetic process	IEP	Neighborhood
BP	GO:0010423	negative regulation of brassinosteroid biosynthetic process	IEP	Neighborhood
BP	GO:0010894	negative regulation of steroid biosynthetic process	IEP	Neighborhood
BP	GO:0010928	regulation of auxin mediated signaling pathway	IEP	Neighborhood
CC	GO:0012506	vesicle membrane	IEP	Neighborhood
BP	GO:0016226	iron-sulfur cluster assembly	IEP	Neighborhood
BP	GO:0016310	phosphorylation	IEP	Neighborhood
CC	GO:0016328	lateral plasma membrane	IEP	Neighborhood
MF	GO:0016411	acylglycerol O-acyltransferase activity	IEP	Neighborhood
MF	GO:0016721	oxidoreductase activity, acting on superoxide radicals as acceptor	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016746	transferase activity, transferring acyl groups	IEP	Neighborhood
MF	GO:0016782	transferase activity, transferring sulfur-containing groups	IEP	Neighborhood
MF	GO:0016819	hydrolase activity, acting on acid anhydrides, in sulfonyl-containing anhydrides	IEP	Neighborhood
BP	GO:0019218	regulation of steroid metabolic process	IEP	Neighborhood
BP	GO:0019430	removal of superoxide radicals	IEP	Neighborhood
BP	GO:0019750	chloroplast localization	IEP	Neighborhood
BP	GO:0022611	dormancy process	IEP	Neighborhood
BP	GO:0022898	regulation of transmembrane transporter activity	IEP	Neighborhood
BP	GO:0030154	cell differentiation	IEP	Neighborhood
BP	GO:0030497	fatty acid elongation	IEP	Neighborhood
BP	GO:0030522	intracellular receptor signaling pathway	IEP	Neighborhood
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	Neighborhood
BP	GO:0032350	regulation of hormone metabolic process	IEP	Neighborhood
BP	GO:0032351	negative regulation of hormone metabolic process	IEP	Neighborhood
BP	GO:0032353	negative regulation of hormone biosynthetic process	IEP	Neighborhood
BP	GO:0032409	regulation of transporter activity	IEP	Neighborhood
BP	GO:0032410	negative regulation of transporter activity	IEP	Neighborhood
BP	GO:0032412	regulation of ion transmembrane transporter activity	IEP	Neighborhood
BP	GO:0032413	negative regulation of ion transmembrane transporter activity	IEP	Neighborhood
BP	GO:0032879	regulation of localization	IEP	Neighborhood
BP	GO:0034614	cellular response to reactive oxygen species	IEP	Neighborhood
BP	GO:0034644	cellular response to UV	IEP	Neighborhood
BP	GO:0034762	regulation of transmembrane transport	IEP	Neighborhood
BP	GO:0034763	negative regulation of transmembrane transport	IEP	Neighborhood
BP	GO:0034765	regulation of ion transmembrane transport	IEP	Neighborhood
BP	GO:0034766	negative regulation of ion transmembrane transport	IEP	Neighborhood
BP	GO:0035690	cellular response to drug	IEP	Neighborhood
MF	GO:0042171	lysophosphatidic acid acyltransferase activity	IEP	Neighborhood
CC	GO:0042579	microbody	IEP	Neighborhood
BP	GO:0043269	regulation of ion transport	IEP	Neighborhood
BP	GO:0043271	negative regulation of ion transport	IEP	Neighborhood
BP	GO:0043473	pigmentation	IEP	Neighborhood
BP	GO:0043476	pigment accumulation	IEP	Neighborhood
BP	GO:0043478	pigment accumulation in response to UV light	IEP	Neighborhood
BP	GO:0043479	pigment accumulation in tissues in response to UV light	IEP	Neighborhood
BP	GO:0043480	pigment accumulation in tissues	IEP	Neighborhood
BP	GO:0043481	anthocyanin accumulation in tissues in response to UV light	IEP	Neighborhood
CC	GO:0044459	plasma membrane part	IEP	Neighborhood
BP	GO:0045833	negative regulation of lipid metabolic process	IEP	Neighborhood
BP	GO:0045939	negative regulation of steroid metabolic process	IEP	Neighborhood
BP	GO:0045962	positive regulation of development, heterochronic	IEP	Neighborhood
BP	GO:0046777	protein autophosphorylation	IEP	Neighborhood
BP	GO:0046885	regulation of hormone biosynthetic process	IEP	Neighborhood
BP	GO:0046890	regulation of lipid biosynthetic process	IEP	Neighborhood
MF	GO:0047627	adenylylsulfatase activity	IEP	Neighborhood
MF	GO:0047807	cytokinin 7-beta-glucosyltransferase activity	IEP	Neighborhood
BP	GO:0048481	plant ovule development	IEP	Neighborhood
BP	GO:0048609	multicellular organismal reproductive process	IEP	Neighborhood
BP	GO:0048766	root hair initiation	IEP	Neighborhood
BP	GO:0048767	root hair elongation	IEP	Neighborhood
MF	GO:0050662	coenzyme binding	IEP	Neighborhood
BP	GO:0050810	regulation of steroid biosynthetic process	IEP	Neighborhood
BP	GO:0051049	regulation of transport	IEP	Neighborhood
BP	GO:0051051	negative regulation of transport	IEP	Neighborhood
BP	GO:0051055	negative regulation of lipid biosynthetic process	IEP	Neighborhood
BP	GO:0051640	organelle localization	IEP	Neighborhood
BP	GO:0051644	plastid localization	IEP	Neighborhood
BP	GO:0051656	establishment of organelle localization	IEP	Neighborhood
BP	GO:0051667	establishment of plastid localization	IEP	Neighborhood
BP	GO:0061024	membrane organization	IEP	Neighborhood
BP	GO:0071236	cellular response to antibiotic	IEP	Neighborhood
BP	GO:0071457	cellular response to ozone	IEP	Neighborhood
BP	GO:0071470	cellular response to osmotic stress	IEP	Neighborhood
BP	GO:0071472	cellular response to salt stress	IEP	Neighborhood
BP	GO:0071483	cellular response to blue light	IEP	Neighborhood
BP	GO:0071484	cellular response to light intensity	IEP	Neighborhood
BP	GO:0071486	cellular response to high light intensity	IEP	Neighborhood
BP	GO:0071493	cellular response to UV-B	IEP	Neighborhood
MF	GO:0071617	lysophospholipid acyltransferase activity	IEP	Neighborhood
MF	GO:0080062	cytokinin 9-beta-glucosyltransferase activity	IEP	Neighborhood
MF	GO:0080161	auxin transmembrane transporter activity	IEP	Neighborhood
BP	GO:0090030	regulation of steroid hormone biosynthetic process	IEP	Neighborhood
BP	GO:0090032	negative regulation of steroid hormone biosynthetic process	IEP	Neighborhood
CC	GO:0098552	side of membrane	IEP	Neighborhood
CC	GO:0098562	cytoplasmic side of membrane	IEP	Neighborhood
BP	GO:0098869	cellular oxidant detoxification	IEP	Neighborhood
BP	GO:1903792	negative regulation of anion transport	IEP	Neighborhood
BP	GO:1903960	negative regulation of anion transmembrane transport	IEP	Neighborhood
BP	GO:1904062	regulation of cation transmembrane transport	IEP	Neighborhood
BP	GO:1905392	plant organ morphogenesis	IEP	Neighborhood
BP	GO:1990748	cellular detoxification	IEP	Neighborhood
BP	GO:2000280	regulation of root development	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	217	263

External Links

No external refs found!

AT2G20180 (PIL5, PIF1)

Expression Profile

Co-expression Networks

Functional Annotation