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  5. Gb_05354

Gb_05354


Description : Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana (sp|q9zuw3|pp172_arath : 640.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_05354
Cluster HCCA: Cluster_257

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00268260 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
GSVIVT01015318001 No alias Pentatricopeptide repeat-containing protein At1g77170,... 0.03 Archaeplastida
GSVIVT01018597001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
Gb_03263 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
Gb_03597 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
Gb_05942 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_06523 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
Gb_06899 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_07570 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_08964 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
Gb_09361 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 Archaeplastida
Gb_09654 No alias RNA editing factor (MEF13) 0.04 Archaeplastida
Gb_09702 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Gb_10985 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Gb_12554 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
Gb_14392 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_15235 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
Gb_16366 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
Gb_17177 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_17382 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.04 Archaeplastida
Gb_18436 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida
Gb_21965 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_24126 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.05 Archaeplastida
Gb_26340 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
Gb_26501 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_26723 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 Archaeplastida
Gb_27833 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_28612 No alias RNA editing factor (MEF11) 0.04 Archaeplastida
Gb_28764 No alias RNA editing factor (MEF1) 0.04 Archaeplastida
Gb_29534 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
Gb_29868 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_30732 No alias Pentatricopeptide repeat-containing protein At3g02330,... 0.05 Archaeplastida
Gb_31498 No alias RNA editing factor (MEF19) 0.04 Archaeplastida
Gb_32456 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.07 Archaeplastida
Gb_33136 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_36085 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
Gb_38129 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_38297 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
Gb_38504 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_38750 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_40472 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_10427342g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
MA_10428121g0010 No alias Pentatricopeptide repeat-containing protein At4g37170... 0.05 Archaeplastida
MA_10429540g0020 No alias Pentatricopeptide repeat-containing protein At4g14850... 0.05 Archaeplastida
MA_14381g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
MA_33151g0010 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.04 Archaeplastida
MA_39801g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
MA_440697g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
MA_52613g0020 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_62815g0010 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.05 Archaeplastida
MA_632994g0010 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.03 Archaeplastida
MA_812716g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
MA_8210920g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
MA_83898g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_96662g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
Solyc01g100790.1.1 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.03 Archaeplastida
Solyc02g005280.1.1 No alias Pentatricopeptide repeat-containing protein At1g50270... 0.03 Archaeplastida
Solyc02g065560.1.1 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.03 Archaeplastida
Solyc02g070710.3.1 No alias Pentatricopeptide repeat-containing protein At3g20730... 0.05 Archaeplastida
Solyc04g005460.1.1 No alias Pentatricopeptide repeat-containing protein At2g20540... 0.04 Archaeplastida
Solyc04g063300.3.1 No alias Pentatricopeptide repeat-containing protein At3g26540... 0.03 Archaeplastida
Solyc07g005740.1.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
Solyc07g006990.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc08g078570.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc09g010070.1.1 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.04 Archaeplastida
Solyc09g075170.1.1 No alias Pentatricopeptide repeat-containing protein At3g62890... 0.03 Archaeplastida
Solyc11g067210.1.1 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 196 219
IPR002885 Pentatricopeptide_repeat 600 623
IPR002885 Pentatricopeptide_repeat 424 471
IPR002885 Pentatricopeptide_repeat 222 268
IPR002885 Pentatricopeptide_repeat 325 370
IPR002885 Pentatricopeptide_repeat 525 572
IPR002885 Pentatricopeptide_repeat 125 171
IPR032867 DYW_dom 699 822
No external refs found!