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  5. Gb_05462

Gb_05462


Description : PAP11/MURE cofactor of plastid-encoded RNA polymerase


Gene families : OG0007095 (Archaeplastida) Phylogenetic Tree(s): OG0007095_tree ,
OG_05_0007962 (LandPlants) Phylogenetic Tree(s): OG_05_0007962_tree ,
OG_06_0009347 (SeedPlants) Phylogenetic Tree(s): OG_06_0009347_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_05462
Cluster HCCA: Cluster_151

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00236210 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle machineries.RNA polymerase... 0.06 Archaeplastida
AT1G63680 MURE, PDE316, ATMURE acid-amino acid ligases;ligases;ATP binding;ATP binding;ligases 0.15 Archaeplastida
Cre12.g519900 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.01 Archaeplastida
GSVIVT01019746001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.11 Archaeplastida
MA_961480g0010 No alias PAP11/MURE cofactor of plastid-encoded RNA polymerase 0.04 Archaeplastida
Mp6g20740.1 No alias PAP11/MURE cofactor of plastid-encoded RNA polymerase 0.06 Archaeplastida
Pp3c23_15810V3.1 No alias acid-amino acid ligases;ligases;ATP binding;ATP binding;ligases 0.02 Archaeplastida
Pp3c24_18820V3.1 No alias acid-amino acid ligases;ligases;ATP binding;ATP binding;ligases 0.08 Archaeplastida
Solyc08g081170.4.1 No alias PAP11/MURE cofactor of plastid-encoded RNA polymerase 0.05 Archaeplastida
Zm00001e037912_P001 No alias PAP11/MURE cofactor of plastid-encoded RNA polymerase 0.09 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0009058 biosynthetic process IEA Interproscan
MF GO:0016874 ligase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004640 phosphoribosylanthranilate isomerase activity IEP Neighborhood
MF GO:0004784 superoxide dismutase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006568 tryptophan metabolic process IEP Neighborhood
BP GO:0006576 cellular biogenic amine metabolic process IEP Neighborhood
BP GO:0006586 indolalkylamine metabolic process IEP Neighborhood
BP GO:0006801 superoxide metabolic process IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
BP GO:0009308 amine metabolic process IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0016226 iron-sulfur cluster assembly IEP Neighborhood
MF GO:0016597 amino acid binding IEP Neighborhood
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Neighborhood
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Neighborhood
MF GO:0016860 intramolecular oxidoreductase activity IEP Neighborhood
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
BP GO:0031163 metallo-sulfur cluster assembly IEP Neighborhood
MF GO:0031406 carboxylic acid binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0042430 indole-containing compound metabolic process IEP Neighborhood
MF GO:0043177 organic acid binding IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0044106 cellular amine metabolic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0072593 reactive oxygen species metabolic process IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR013221 Mur_ligase_cen 471 676
IPR000713 Mur_ligase_N 382 438
IPR004101 Mur_ligase_C 697 779
No external refs found!