Gb_05648

Description : Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana (sp|q9lfl5|pp390_arath : 583.0)

Gene families : OG0008251 (Archaeplastida) Phylogenetic Tree(s): OG0008251_tree ,
OG_05_0063176 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0056627 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_05648
Cluster	HCCA: Cluster_231

Target	Alias	Description	ECC score	Gene Family Method	Actions
MA_56660g0010	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR032867	DYW_dom	630	754
IPR002885	Pentatricopeptide_repeat	153	196
IPR002885	Pentatricopeptide_repeat	456	504
IPR002885	Pentatricopeptide_repeat	355	403
IPR002885	Pentatricopeptide_repeat	273	333
IPR002885	Pentatricopeptide_repeat	225	251
IPR002885	Pentatricopeptide_repeat	532	555
IPR002885	Pentatricopeptide_repeat	124	150

External Links

No external refs found!

Gb_05648

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation