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  5. Gb_05661

Gb_05661


Description : adherin (SCC2)


Gene families : OG0003452 (Archaeplastida) Phylogenetic Tree(s): OG0003452_tree ,
OG_05_0003604 (LandPlants) Phylogenetic Tree(s): OG_05_0003604_tree ,
OG_06_0004098 (SeedPlants) Phylogenetic Tree(s): OG_06_0004098_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_05661
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00110p00053630 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.sister chromatid... 0.04 Archaeplastida
AT5G15540 SCC2, ATSCC2, EMB2773 PHD finger family protein 0.07 Archaeplastida
GSVIVT01011514001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.04 Archaeplastida
LOC_Os07g01940.1 No alias adherin (SCC2) 0.04 Archaeplastida
MA_10437214g0010 No alias no hits & (original description: none) 0.08 Archaeplastida
MA_10437214g0020 No alias adherin (SCC2) 0.09 Archaeplastida
Mp4g10640.1 No alias adherin (SCC2) 0.07 Archaeplastida
Smo440913 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.05 Archaeplastida
Solyc03g059420.4.1 No alias No annotation 0.1 Archaeplastida
Zm00001e011569_P001 No alias adherin (SCC2) 0.04 Archaeplastida
Zm00001e032695_P001 No alias adherin (SCC2) 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004819 glutamine-tRNA ligase activity IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006425 glutaminyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008131 primary amine oxidase activity IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009308 amine metabolic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Neighborhood
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0017069 snRNA binding IEP Neighborhood
MF GO:0017070 U6 snRNA binding IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0030623 U5 snRNA binding IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0048038 quinone binding IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR024986 Nipped-B_C 1361 1556
IPR026003 Cohesin_HEAT 863 904
No external refs found!