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  5. Gb_05982

Gb_05982


Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana (sp|q9sy02|pp301_arath : 630.0)


Gene families : OG0002360 (Archaeplastida) Phylogenetic Tree(s): OG0002360_tree ,
OG_05_0000472 (LandPlants) Phylogenetic Tree(s): OG_05_0000472_tree ,
OG_06_0000277 (SeedPlants) Phylogenetic Tree(s): OG_06_0000277_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_05982
Cluster HCCA: Cluster_300

Target Alias Description ECC score Gene Family Method Actions
Gb_02613 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
Gb_18978 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
Gb_35793 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
LOC_Os08g05750.1 No alias Pentatricopeptide repeat-containing protein At4g16835,... 0.03 Archaeplastida
MA_10431508g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
MA_12023g0010 No alias RNA editing factor (MEF9) 0.05 Archaeplastida
MA_121102g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
MA_136498g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 Archaeplastida
MA_14659g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_189553g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
MA_376862g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_42343g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_68580g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
MA_71420g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
MA_858608g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.08 Archaeplastida
MA_904305g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Smo92492 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
Zm00001e026664_P002 No alias RNA editing factor (BLX) 0.04 Archaeplastida
Zm00001e032581_P001 No alias RNA editing factor (BLX) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
InterPro domains Description Start Stop
IPR032867 DYW_dom 686 810
IPR002885 Pentatricopeptide_repeat 350 382
IPR002885 Pentatricopeptide_repeat 155 203
IPR002885 Pentatricopeptide_repeat 513 561
IPR002885 Pentatricopeptide_repeat 412 459
IPR002885 Pentatricopeptide_repeat 257 289
IPR002885 Pentatricopeptide_repeat 383 411
IPR002885 Pentatricopeptide_repeat 63 86
IPR002885 Pentatricopeptide_repeat 587 611
IPR002885 Pentatricopeptide_repeat 290 319
IPR002885 Pentatricopeptide_repeat 656 682
No external refs found!