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  5. Gb_06149

Gb_06149


Description : RNA-directed DNA polymerase homolog OS=Oenothera berteroana (sp|p31843|rrpo_oenbe : 131.0)


Gene families : OG0000001 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000372 (LandPlants) Phylogenetic Tree(s): OG_05_0000372_tree ,
OG_06_0000167 (SeedPlants) Phylogenetic Tree(s): OG_06_0000167_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_06149
Cluster HCCA: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
ATMG00860 ORF158 DNA/RNA polymerases superfamily protein 0.05 Archaeplastida
ChrSy.fgenesh.mRNA.34 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.03 Archaeplastida
ChrSy.fgenesh.mRNA.55 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.03 Archaeplastida
ChrSy.fgenesh.mRNA.62 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.04 Archaeplastida
ChrUn.fgenesh.mRNA.11 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.03 Archaeplastida
ChrUn.fgenesh.mRNA.88 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.03 Archaeplastida
Cpa|evm.model.tig00001038.11 No alias No description available 0.02 Archaeplastida
Gb_00235 No alias Uncharacterized mitochondrial protein AtMg00860... 0.14 Archaeplastida
Gb_09554 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.12 Archaeplastida
Gb_13328 No alias no hits & (original description: none) 0.16 Archaeplastida
Gb_14507 No alias no hits & (original description: none) 0.17 Archaeplastida
Gb_16342 No alias Uncharacterized mitochondrial protein AtMg00860... 0.06 Archaeplastida
Gb_18223 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.07 Archaeplastida
Gb_18576 No alias no hits & (original description: none) 0.07 Archaeplastida
Gb_21108 No alias Uncharacterized mitochondrial protein AtMg00860... 0.04 Archaeplastida
Gb_25344 No alias Uncharacterized mitochondrial protein AtMg00860... 0.13 Archaeplastida
Gb_27104 No alias no hits & (original description: none) 0.08 Archaeplastida
Gb_30122 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.14 Archaeplastida
Gb_30475 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.09 Archaeplastida
Gb_36033 No alias no hits & (original description: none) 0.09 Archaeplastida
Gb_36303 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.12 Archaeplastida
Gb_36546 No alias Uncharacterized mitochondrial protein AtMg00860... 0.05 Archaeplastida
Gb_36965 No alias no hits & (original description: none) 0.08 Archaeplastida
Gb_38300 No alias no hits & (original description: none) 0.07 Archaeplastida
Gb_38708 No alias Uncharacterized mitochondrial protein AtMg00860... 0.07 Archaeplastida
Gb_40215 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.09 Archaeplastida
Pp3c3_35120V3.1 No alias No annotation 0.02 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000477 RT_dom 898 1058
IPR001584 Integrase_cat-core 1406 1518
No external refs found!