Gb_06193

Description : Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana (sp|q9ltv8|pp224_arath : 661.0)

Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_06193
Cluster	HCCA: Cluster_257

Target	Alias	Description	ECC score	Gene Family Method
AT3G63370	OTP86	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Archaeplastida
Gb_06899	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.06	Archaeplastida
Gb_07442	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.04	Archaeplastida
Gb_07570	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.04	Archaeplastida
Gb_08619	No alias	RNA editing factor (MEF19)	0.06	Archaeplastida
Gb_08745	No alias	RNA editing factor (OTP82)	0.05	Archaeplastida
Gb_09361	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.04	Archaeplastida
Gb_09702	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.03	Archaeplastida
Gb_10133	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.06	Archaeplastida
Gb_10158	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
Gb_11389	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
Gb_15235	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
Gb_16101	No alias	Pentatricopeptide repeat-containing protein At4g33990...	0.04	Archaeplastida
Gb_21047	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.04	Archaeplastida
Gb_21064	No alias	RNA editing factor (OTP82)	0.05	Archaeplastida
Gb_23924	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
Gb_24755	No alias	RNA editing factor (MEF19). RNA editing factor (OTP82)	0.03	Archaeplastida
Gb_26501	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.05	Archaeplastida
Gb_26723	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.03	Archaeplastida
Gb_27833	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
Gb_28664	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.05	Archaeplastida
Gb_28764	No alias	RNA editing factor (MEF1)	0.04	Archaeplastida
Gb_29534	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
Gb_29768	No alias	Pentatricopeptide repeat-containing protein At1g19720...	0.06	Archaeplastida
Gb_29868	No alias	RNA editing factor (OTP82)	0.04	Archaeplastida
Gb_30732	No alias	Pentatricopeptide repeat-containing protein At3g02330,...	0.03	Archaeplastida
Gb_31546	No alias	RNA editing factor (MEF3)	0.04	Archaeplastida
Gb_33070	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.05	Archaeplastida
Gb_33136	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
Gb_33719	No alias	RNA editing factor (OTP82)	0.04	Archaeplastida
Gb_34299	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.09	Archaeplastida
Gb_36085	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.06	Archaeplastida
Gb_38242	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.05	Archaeplastida
Gb_38504	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.06	Archaeplastida
Gb_38750	No alias	RNA editing factor (OTP82)	0.04	Archaeplastida
Gb_39558	No alias	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida
Gb_40472	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.05	Archaeplastida
MA_10214098g0010	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.04	Archaeplastida
MA_102449g0020	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.03	Archaeplastida
MA_10277392g0010	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.04	Archaeplastida
MA_10427342g0010	No alias	Pentatricopeptide repeat-containing protein At3g09040,...	0.07	Archaeplastida
MA_10428121g0010	No alias	Pentatricopeptide repeat-containing protein At4g37170...	0.04	Archaeplastida
MA_10431227g0020	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
MA_106123g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_107356g0010	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
MA_112594g0010	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.03	Archaeplastida
MA_112849g0010	No alias	Pentatricopeptide repeat-containing protein At3g09040,...	0.05	Archaeplastida
MA_114722g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_11765g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.05	Archaeplastida
MA_117676g0010	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.05	Archaeplastida
MA_123466g0010	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
MA_13057g0010	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.03	Archaeplastida
MA_130735g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
MA_131g0010	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.03	Archaeplastida
MA_136326g0010	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
MA_138190g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
MA_138676g0010	No alias	RNA editing factor (ECD1)	0.03	Archaeplastida
MA_141731g0010	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.05	Archaeplastida
MA_14381g0010	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.03	Archaeplastida
MA_14938g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_1673g0010	No alias	Pentatricopeptide repeat-containing protein At1g19720...	0.03	Archaeplastida
MA_175688g0010	No alias	Putative pentatricopeptide repeat-containing protein...	0.02	Archaeplastida
MA_17949g0010	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
MA_183278g0010	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.03	Archaeplastida
MA_19816g0010	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.03	Archaeplastida
MA_20899g0020	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.05	Archaeplastida
MA_22485g0010	No alias	Pentatricopeptide repeat-containing protein At3g46790,...	0.02	Archaeplastida
MA_2473g0010	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.03	Archaeplastida
MA_25584g0010	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
MA_28390g0010	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.07	Archaeplastida
MA_286190g0010	No alias	Pentatricopeptide repeat-containing protein At3g63370,...	0.03	Archaeplastida
MA_30632g0020	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.05	Archaeplastida
MA_322292g0010	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.04	Archaeplastida
MA_33151g0010	No alias	Pentatricopeptide repeat-containing protein At1g18485...	0.04	Archaeplastida
MA_3317g0020	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
MA_33533g0010	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.04	Archaeplastida
MA_412g0010	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.03	Archaeplastida
MA_43497g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
MA_440697g0010	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
MA_445076g0010	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.03	Archaeplastida
MA_4503g0010	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.04	Archaeplastida
MA_482767g0010	No alias	Pentatricopeptide repeat-containing protein At1g20230...	0.03	Archaeplastida
MA_50118g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
MA_519985g0010	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
MA_5481g0010	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
MA_57048g0010	No alias	Pentatricopeptide repeat-containing protein At3g09040,...	0.03	Archaeplastida
MA_62815g0010	No alias	Pentatricopeptide repeat-containing protein At1g25360...	0.05	Archaeplastida
MA_683665g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.06	Archaeplastida
MA_68933g0010	No alias	Pentatricopeptide repeat-containing protein At3g24000,...	0.07	Archaeplastida
MA_75255g0010	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.03	Archaeplastida
MA_7691g0010	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.03	Archaeplastida
MA_77437g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.05	Archaeplastida
MA_778985g0010	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.03	Archaeplastida
MA_805687g0010	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.04	Archaeplastida
MA_81436g0010	No alias	Pentatricopeptide repeat-containing protein At4g21300...	0.03	Archaeplastida
MA_8607116g0010	No alias	Pentatricopeptide repeat-containing protein At3g24000,...	0.03	Archaeplastida
MA_86628g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.05	Archaeplastida
MA_8678g0010	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.04	Archaeplastida
MA_86894g0010	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.03	Archaeplastida
MA_89214g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.05	Archaeplastida
MA_9415113g0010	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.04	Archaeplastida
MA_9526611g0020	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
MA_953240g0010	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.04	Archaeplastida
MA_96662g0010	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.04	Archaeplastida
Solyc02g005280.1.1	No alias	Pentatricopeptide repeat-containing protein At1g50270...	0.03	Archaeplastida
Solyc02g065560.1.1	No alias	Pentatricopeptide repeat-containing protein At2g33680...	0.03	Archaeplastida
Solyc02g070710.3.1	No alias	Pentatricopeptide repeat-containing protein At3g20730...	0.04	Archaeplastida
Solyc04g005460.1.1	No alias	Pentatricopeptide repeat-containing protein At2g20540...	0.03	Archaeplastida
Solyc04g063300.3.1	No alias	Pentatricopeptide repeat-containing protein At3g26540...	0.03	Archaeplastida
Solyc07g005740.1.1	No alias	Pentatricopeptide repeat-containing protein At4g21065...	0.03	Archaeplastida
Solyc07g006990.3.1	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
Solyc08g078570.3.1	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
Solyc09g075170.1.1	No alias	Pentatricopeptide repeat-containing protein At3g62890...	0.03	Archaeplastida
Zm00001e028503_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e029119_P001	No alias	Pentatricopeptide repeat-containing protein At2g33760...	0.03	Archaeplastida
Zm00001e041048_P001	No alias	RNA editing factor (OTP86)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Neighborhood
MF	GO:0004527	exonuclease activity	IEP	Neighborhood
BP	GO:0006260	DNA replication	IEP	Neighborhood
MF	GO:0008408	3'-5' exonuclease activity	IEP	Neighborhood
MF	GO:0034061	DNA polymerase activity	IEP	Neighborhood
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR032867	DYW_dom	848	972
IPR002885	Pentatricopeptide_repeat	473	520
IPR002885	Pentatricopeptide_repeat	573	620
IPR002885	Pentatricopeptide_repeat	372	419
IPR002885	Pentatricopeptide_repeat	674	722
IPR002885	Pentatricopeptide_repeat	819	844
IPR002885	Pentatricopeptide_repeat	750	774

External Links

No external refs found!

Gb_06193

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation