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  5. Gb_06545

Gb_06545


Description : Pentatricopeptide repeat-containing protein At2g06000 OS=Arabidopsis thaliana (sp|q9zue9|pp149_arath : 396.0)


Gene families : OG0000198 (Archaeplastida) Phylogenetic Tree(s): OG0000198_tree ,
OG_05_0010487 (LandPlants) Phylogenetic Tree(s): OG_05_0010487_tree ,
OG_06_0009618 (SeedPlants) Phylogenetic Tree(s): OG_06_0009618_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_06545
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00015p00258950 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16420,... 0.05 Archaeplastida
AMTR_s00029p00104100 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g61870,... 0.03 Archaeplastida
AMTR_s00029p00214000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g09060... 0.06 Archaeplastida
AMTR_s00111p00140430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g01400,... 0.05 Archaeplastida
AMTR_s00221p00020810 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16420,... 0.05 Archaeplastida
AT1G53330 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT1G74580 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT2G06000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT2G17525 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT3G09060 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 Archaeplastida
AT4G01400 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.03 Archaeplastida
AT5G18475 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 Archaeplastida
AT5G46100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Archaeplastida
AT5G64320 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 Archaeplastida
GSVIVT01031218001 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.04 Archaeplastida
Gb_12002 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.05 Archaeplastida
Gb_14900 No alias Pentatricopeptide repeat-containing protein At4g20090... 0.05 Archaeplastida
LOC_Os01g63400.1 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.02 Archaeplastida
LOC_Os05g11700.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_10316984g0010 No alias group-II intron mitochondrial splicing factor (MISF74) 0.05 Archaeplastida
MA_128052g0010 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.06 Archaeplastida
MA_137206g0010 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.03 Archaeplastida
MA_71816g0020 No alias Pentatricopeptide repeat-containing protein At3g14580,... 0.03 Archaeplastida
MA_80720g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc12g014330.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Solyc12g035170.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Zm00001e003447_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e011589_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e027557_P001 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.03 Archaeplastida
Zm00001e028938_P001 No alias Pentatricopeptide repeat-containing protein At1g55890,... 0.02 Archaeplastida
Zm00001e030818_P001 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.08 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 137 166
IPR002885 Pentatricopeptide_repeat 173 202
IPR002885 Pentatricopeptide_repeat 449 494
IPR002885 Pentatricopeptide_repeat 377 425
IPR002885 Pentatricopeptide_repeat 310 359
IPR002885 Pentatricopeptide_repeat 239 288
No external refs found!