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  5. Gb_06576

Gb_06576


Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana (sp|q9sy02|pp301_arath : 369.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0013527 (LandPlants) Phylogenetic Tree(s): OG_05_0013527_tree ,
OG_06_0027406 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_06576
Cluster HCCA: Cluster_300

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00204910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g19191,... 0.04 Archaeplastida
AMTR_s00029p00235510 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.06 Archaeplastida
AMTR_s00098p00155650 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g39350... 0.03 Archaeplastida
AMTR_s00099p00036710 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g71490... 0.02 Archaeplastida
GSVIVT01000420001 No alias RNA processing.organelle machineries.RNA... 0.05 Archaeplastida
GSVIVT01004939001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01007937001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.03 Archaeplastida
GSVIVT01007974001 No alias Pentatricopeptide repeat-containing protein At5g61400... 0.04 Archaeplastida
GSVIVT01008537001 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.04 Archaeplastida
GSVIVT01010125001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
GSVIVT01010647001 No alias Pentatricopeptide repeat-containing protein At2g22410,... 0.06 Archaeplastida
GSVIVT01012174001 No alias Pentatricopeptide repeat-containing protein At2g03380,... 0.05 Archaeplastida
GSVIVT01015087001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.07 Archaeplastida
GSVIVT01019116001 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.06 Archaeplastida
GSVIVT01020929001 No alias Pentatricopeptide repeat-containing protein At1g04840... 0.05 Archaeplastida
GSVIVT01021015001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
GSVIVT01022230001 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.03 Archaeplastida
GSVIVT01024870001 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.04 Archaeplastida
GSVIVT01026881001 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.04 Archaeplastida
GSVIVT01029347001 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
GSVIVT01030054001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.04 Archaeplastida
GSVIVT01030443001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.05 Archaeplastida
GSVIVT01031265001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.06 Archaeplastida
GSVIVT01032950001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
GSVIVT01036757001 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.04 Archaeplastida
Gb_03571 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
Gb_03578 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.1 Archaeplastida
Gb_03997 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_04886 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.07 Archaeplastida
Gb_07290 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 Archaeplastida
Gb_07442 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.06 Archaeplastida
Gb_08518 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida
Gb_09702 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_10157 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
Gb_11389 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
Gb_12585 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.05 Archaeplastida
Gb_14966 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.05 Archaeplastida
Gb_16955 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_17177 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.07 Archaeplastida
Gb_19299 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Gb_19828 No alias RNA editing factor (OTP82) 0.05 Archaeplastida
Gb_24755 No alias RNA editing factor (MEF19). RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_25604 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Gb_25869 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.04 Archaeplastida
Gb_26158 No alias RNA editing factor (OTP82) 0.05 Archaeplastida
Gb_27176 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_33335 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.07 Archaeplastida
Gb_33828 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
Gb_36433 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.08 Archaeplastida
Gb_39514 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.07 Archaeplastida
Gb_40766 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
LOC_Os06g12510.1 No alias Pentatricopeptide repeat-containing protein At5g15300... 0.06 Archaeplastida
MA_103380g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.06 Archaeplastida
MA_10432670g0020 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
MA_10433543g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_10435641g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.07 Archaeplastida
MA_114565g0020 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.03 Archaeplastida
MA_116442g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
MA_11765g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_122899g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_124907g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.07 Archaeplastida
MA_131437g0010 No alias RNA editing factor (MEF3) 0.03 Archaeplastida
MA_136188g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_138190g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_140208g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_14381g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
MA_18383g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_185098g0010 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.03 Archaeplastida
MA_285386g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 Archaeplastida
MA_39263g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida
MA_43497g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.08 Archaeplastida
MA_46875g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.03 Archaeplastida
MA_474261g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.07 Archaeplastida
MA_59148g0010 No alias RNA editing factor (MEF11) 0.04 Archaeplastida
MA_656915g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
MA_66417g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.09 Archaeplastida
MA_742g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_77437g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_79624g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
MA_83898g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
Solyc02g005280.1.1 No alias Pentatricopeptide repeat-containing protein At1g50270... 0.04 Archaeplastida
Solyc03g007840.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Solyc03g082830.2.1 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 Archaeplastida
Solyc03g111210.4.1 No alias RNA editing factor (OTP80) 0.03 Archaeplastida
Solyc03g116000.1.1 No alias Pentatricopeptide repeat-containing protein At3g47530... 0.03 Archaeplastida
Solyc06g009500.1.1 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
Solyc07g005740.1.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.04 Archaeplastida
Solyc07g062820.1.1 No alias RNA editing factor (SEL1/PDM1) 0.03 Archaeplastida
Solyc11g008940.1.1 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
Zm00001e003605_P001 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Zm00001e009339_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e011467_P004 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0042393 histone binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 123 169
IPR002885 Pentatricopeptide_repeat 22 68
IPR032867 DYW_dom 296 349
IPR002885 Pentatricopeptide_repeat 197 221
IPR002885 Pentatricopeptide_repeat 2 21
No external refs found!