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  5. Gb_06985

Gb_06985


Description : Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana (sp|q9smz2|pp347_arath : 624.0)


Gene families : OG0031137 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0029051 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0027483 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_06985
Cluster HCCA: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
Gb_24918 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
InterPro domains Description Start Stop
IPR032867 DYW_dom 917 1030
IPR002885 Pentatricopeptide_repeat 644 691
IPR002885 Pentatricopeptide_repeat 542 588
IPR002885 Pentatricopeptide_repeat 744 791
IPR002885 Pentatricopeptide_repeat 208 255
IPR002885 Pentatricopeptide_repeat 340 388
IPR002885 Pentatricopeptide_repeat 151 178
IPR002885 Pentatricopeptide_repeat 718 742
IPR002885 Pentatricopeptide_repeat 283 309
IPR002885 Pentatricopeptide_repeat 443 472
IPR002885 Pentatricopeptide_repeat 516 541
IPR002885 Pentatricopeptide_repeat 617 643
No external refs found!