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  5. Gb_07025

Gb_07025


Description : transcription factor (REM)


Gene families : OG0000741 (Archaeplastida) Phylogenetic Tree(s): OG0000741_tree ,
OG_05_0001199 (LandPlants) Phylogenetic Tree(s): OG_05_0001199_tree ,
OG_06_0001296 (SeedPlants) Phylogenetic Tree(s): OG_06_0001296_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_07025
Cluster HCCA: Cluster_184

Target Alias Description ECC score Gene Family Method Actions
AT5G58280 No alias AP2/B3-like transcriptional factor family protein 0.03 Archaeplastida
GSVIVT01005087001 No alias B3 domain-containing transcription factor VRN1... 0.03 Archaeplastida
GSVIVT01009519001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
GSVIVT01024536001 No alias RNA biosynthesis.transcriptional activation.B3... 0.02 Archaeplastida
GSVIVT01031761001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
LOC_Os06g09420.1 No alias transcription factor (REM) 0.03 Archaeplastida
MA_10430774g0010 No alias No annotation 0.03 Archaeplastida
MA_10433064g0010 No alias transcription factor (REM) 0.03 Archaeplastida
MA_430451g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_59943g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp2g08790.1 No alias transcription factor (REM) 0.05 Archaeplastida
Pp3c17_16150V3.1 No alias AP2/B3-like transcriptional factor family protein 0.02 Archaeplastida
Pp3c1_15410V3.1 No alias AP2/B3-like transcriptional factor family protein 0.03 Archaeplastida
Pp3c2_5990V3.1 No alias AP2/B3-like transcriptional factor family protein 0.04 Archaeplastida
Solyc02g090710.3.1 No alias transcription factor (REM) 0.02 Archaeplastida
Solyc04g079130.2.1 No alias transcription factor (REM) 0.07 Archaeplastida
Solyc06g007530.2.1 No alias transcription factor (REM) 0.06 Archaeplastida
Solyc06g034140.3.1 No alias transcription factor (REM) 0.03 Archaeplastida
Zm00001e000624_P003 No alias transcription factor (REM) 0.02 Archaeplastida
Zm00001e020584_P001 No alias transcription factor (REM) 0.04 Archaeplastida
Zm00001e040028_P004 No alias transcription factor (REM) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003779 actin binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0032299 ribonuclease H2 complex IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 139 226
No external refs found!