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  5. Gb_07106

Gb_07106


Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana (sp|q9sy02|pp301_arath : 620.0)


Gene families : OG0002360 (Archaeplastida) Phylogenetic Tree(s): OG0002360_tree ,
OG_05_0000472 (LandPlants) Phylogenetic Tree(s): OG_05_0000472_tree ,
OG_06_0000277 (SeedPlants) Phylogenetic Tree(s): OG_06_0000277_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_07106
Cluster HCCA: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
Gb_10270 No alias RNA editing factor (MEF8). RNA editing factor (BLX) 0.05 Archaeplastida
Gb_13717 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
Gb_35793 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
MA_10431508g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
MA_12023g0010 No alias RNA editing factor (MEF9) 0.03 Archaeplastida
MA_121102g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_141118g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_14659g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_189553g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
MA_42343g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_68580g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
MA_858608g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_904305g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Zm00001e015695_P001 No alias Pentatricopeptide repeat-containing protein At4g16835,... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 352 401
IPR002885 Pentatricopeptide_repeat 454 502
IPR002885 Pentatricopeptide_repeat 159 206
IPR032867 DYW_dom 627 751
IPR002885 Pentatricopeptide_repeat 68 90
IPR002885 Pentatricopeptide_repeat 293 322
IPR002885 Pentatricopeptide_repeat 234 261
IPR002885 Pentatricopeptide_repeat 324 350
IPR002885 Pentatricopeptide_repeat 528 553
IPR002885 Pentatricopeptide_repeat 262 291
No external refs found!