Gb_07643

Description : Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana (sp|q94hw2|polr1_arath : 416.0)

Gene families : OG0000054 (Archaeplastida) Phylogenetic Tree(s): OG0000054_tree ,
OG_05_0003310 (LandPlants) Phylogenetic Tree(s): OG_05_0003310_tree ,
OG_06_0002023 (SeedPlants) Phylogenetic Tree(s): OG_06_0002023_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_07643
Cluster	HCCA: Cluster_43

Target	Alias	Description	ECC score	Gene Family Method
AT4G23160	CRK8	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	0.02	Archaeplastida
GSVIVT01024357001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
Gb_03159	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.08	Archaeplastida
Gb_07443	No alias	Retrovirus-related Pol polyprotein from transposon RE1...	0.06	Archaeplastida
Gb_21082	No alias	Retrovirus-related Pol polyprotein from transposon RE1...	0.05	Archaeplastida
Gb_37914	No alias	Retrovirus-related Pol polyprotein from transposon RE2...	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
MF	GO:0030246	carbohydrate binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001584	Integrase_cat-core	611	726
IPR013103	RVT_2	964	1206
IPR025724	GAG-pre-integrase_dom	549	597

External Links

No external refs found!