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  5. Gb_07834

Gb_07834


Description : PAP6/FLN1 cofactor of plastid-encoded RNA polymerase


Gene families : OG0000505 (Archaeplastida) Phylogenetic Tree(s): OG0000505_tree ,
OG_05_0006095 (LandPlants) Phylogenetic Tree(s): OG_05_0006095_tree ,
OG_06_0009885 (SeedPlants) Phylogenetic Tree(s): OG_06_0009885_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_07834
Cluster HCCA: Cluster_151

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00193780 evm_27.TU.AmTr_v1... Fructokinase-like 1, chloroplastic OS=Arabidopsis thaliana 0.07 Archaeplastida
AT3G54090 FLN1 fructokinase-like 1 0.1 Archaeplastida
LOC_Os01g63220.2 No alias PAP6/FLN1 cofactor of plastid-encoded RNA polymerase 0.02 Archaeplastida
MA_10430836g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
Mp7g17740.1 No alias PAP6/FLN1 cofactor of plastid-encoded RNA polymerase 0.08 Archaeplastida
Pp3c13_6840V3.1 No alias fructokinase-like 1 0.04 Archaeplastida
Solyc09g011850.4.1 No alias PAP6/FLN1 cofactor of plastid-encoded RNA polymerase 0.13 Archaeplastida
Zm00001e019266_P002 No alias PAP6/FLN1 cofactor of plastid-encoded RNA polymerase 0.09 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004784 superoxide dismutase activity IEP Neighborhood
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006801 superoxide metabolic process IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008175 tRNA methyltransferase activity IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0008483 transaminase activity IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Neighborhood
MF GO:0016597 amino acid binding IEP Neighborhood
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Neighborhood
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Neighborhood
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0031406 carboxylic acid binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043177 organic acid binding IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
MF GO:0070567 cytidylyltransferase activity IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0072593 reactive oxygen species metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR011611 PfkB_dom 194 513
No external refs found!