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  5. AT2G22600

AT2G22600


Description : RNA-binding KH domain-containing protein


Gene families : OG0000393 (Archaeplastida) Phylogenetic Tree(s): OG0000393_tree ,
OG_05_0048265 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0043151 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G22600
Cluster HCCA: Cluster_268

Target Alias Description ECC score Gene Family Method Actions
Solyc05g007810.3.1 No alias RNA-binding KH domain-containing protein RCF3... 0.03 Archaeplastida
Zm00001e010096_P002 No alias KH domain-containing protein HEN4 OS=Arabidopsis... 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000719 photoreactive repair IEP Neighborhood
CC GO:0000798 nuclear cohesin complex IEP Neighborhood
CC GO:0000808 origin recognition complex IEP Neighborhood
BP GO:0003006 developmental process involved in reproduction IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003913 DNA photolyase activity IEP Neighborhood
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Neighborhood
CC GO:0005887 integral component of plasma membrane IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006261 DNA-dependent DNA replication IEP Neighborhood
BP GO:0006290 pyrimidine dimer repair IEP Neighborhood
BP GO:0007130 synaptonemal complex assembly IEP Neighborhood
CC GO:0008278 cohesin complex IEP Neighborhood
MF GO:0008474 palmitoyl-(protein) hydrolase activity IEP Neighborhood
BP GO:0009186 deoxyribonucleoside diphosphate metabolic process IEP Neighborhood
BP GO:0009555 pollen development IEP Neighborhood
BP GO:0009566 fertilization IEP Neighborhood
BP GO:0009567 double fertilization forming a zygote and endosperm IEP Neighborhood
BP GO:0009650 UV protection IEP Neighborhood
CC GO:0009898 cytoplasmic side of plasma membrane IEP Neighborhood
BP GO:0010098 suspensor development IEP Neighborhood
BP GO:0010466 negative regulation of peptidase activity IEP Neighborhood
BP GO:0010951 negative regulation of endopeptidase activity IEP Neighborhood
MF GO:0015204 urea transmembrane transporter activity IEP Neighborhood
BP GO:0015840 urea transport IEP Neighborhood
BP GO:0016567 protein ubiquitination IEP Neighborhood
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Neighborhood
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Neighborhood
BP GO:0019755 one-carbon compound transport IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
BP GO:0030154 cell differentiation IEP Neighborhood
BP GO:0030162 regulation of proteolysis IEP Neighborhood
MF GO:0032442 phenylcoumaran benzylic ether reductase activity IEP Neighborhood
BP GO:0032446 protein modification by small protein conjugation IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0045861 negative regulation of proteolysis IEP Neighborhood
BP GO:0048235 pollen sperm cell differentiation IEP Neighborhood
CC GO:0048555 generative cell nucleus IEP Neighborhood
BP GO:0048598 embryonic morphogenesis IEP Neighborhood
BP GO:0048869 cellular developmental process IEP Neighborhood
BP GO:0051346 negative regulation of hydrolase activity IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
BP GO:0051865 protein autoubiquitination IEP Neighborhood
BP GO:0052547 regulation of peptidase activity IEP Neighborhood
BP GO:0052548 regulation of endopeptidase activity IEP Neighborhood
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Neighborhood
BP GO:0070193 synaptonemal complex organization IEP Neighborhood
BP GO:0080159 zygote elongation IEP Neighborhood
CC GO:0098552 side of membrane IEP Neighborhood
CC GO:0098562 cytoplasmic side of membrane IEP Neighborhood
MF GO:0098599 palmitoyl hydrolase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 144 206
IPR004088 KH_dom_type_1 565 626
IPR004088 KH_dom_type_1 285 328
IPR004088 KH_dom_type_1 27 81
No external refs found!