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  5. Gb_08030

Gb_08030


Description : regulatory component RPN9 of 26S proteasome


Gene families : OG0003836 (Archaeplastida) Phylogenetic Tree(s): OG0003836_tree ,
OG_05_0004385 (LandPlants) Phylogenetic Tree(s): OG_05_0004385_tree ,
OG_06_0004520 (SeedPlants) Phylogenetic Tree(s): OG_06_0004520_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_08030
Cluster HCCA: Cluster_276

Target Alias Description ECC score Gene Family Method Actions
AT4G19006 No alias Proteasome component (PCI) domain protein 0.05 Archaeplastida
Cpa|evm.model.tig00000802.46 No alias No description available 0.03 Archaeplastida
Cpa|evm.model.tig00000802.47 No alias 26S proteasome non-ATPase regulatory subunit 13 homolog... 0.06 Archaeplastida
Cre17.g734516 No alias Protein degradation.26S proteasome.regulatory... 0.07 Archaeplastida
GSVIVT01013003001 No alias Protein degradation.26S proteasome.regulatory... 0.02 Archaeplastida
GSVIVT01013005001 No alias Protein degradation.26S proteasome.regulatory... 0.06 Archaeplastida
LOC_Os01g32800.1 No alias regulatory component RPN9 of 26S proteasome 0.08 Archaeplastida
LOC_Os03g11570.1 No alias regulatory component RPN9 of 26S proteasome 0.09 Archaeplastida
MA_5232g0010 No alias regulatory component RPN9 of 26S proteasome 0.02 Archaeplastida
Mp8g12870.1 No alias regulatory component RPN9 of 26S proteasome 0.04 Archaeplastida
Solyc05g053140.3.1 No alias regulatory component RPN9 of 26S proteasome 0.09 Archaeplastida
Solyc09g090720.3.1 No alias regulatory component RPN9 of 26S proteasome 0.07 Archaeplastida
Zm00001e002491_P003 No alias regulatory component RPN9 of 26S proteasome 0.04 Archaeplastida
Zm00001e013004_P001 No alias regulatory component RPN9 of 26S proteasome 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
BP GO:0006487 protein N-linked glycosylation IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006643 membrane lipid metabolic process IEP Neighborhood
BP GO:0006665 sphingolipid metabolic process IEP Neighborhood
BP GO:0006672 ceramide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
CC GO:0008250 oligosaccharyltransferase complex IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
BP GO:0016255 attachment of GPI anchor to protein IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
CC GO:0042765 GPI-anchor transamidase complex IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000717 PCI_dom 238 343
No external refs found!