Gb_08096

Description : Pentatricopeptide repeat-containing protein At5g61400 OS=Arabidopsis thaliana (sp|q9flj4|pp440_arath : 462.0)

Gene families : OG0017556 (Archaeplastida) Phylogenetic Tree(s): OG0017556_tree ,
OG_05_0017318 (LandPlants) Phylogenetic Tree(s): OG_05_0017318_tree ,
OG_06_0016832 (SeedPlants) Phylogenetic Tree(s): OG_06_0016832_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_08096
Cluster	HCCA: Cluster_341

Target	Alias	Description	ECC score	Gene Family Method	Actions
AMTR_s00077p00118450	evm_27.TU.AmTr_v1...	No description available	0.04	Archaeplastida
AMTR_s00077p00118560	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At5g61400...	0.06	Archaeplastida

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
MF	GO:0004197	cysteine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0004198	calcium-dependent cysteine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
MF	GO:0008234	cysteine-type peptidase activity	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	283	314
IPR002885	Pentatricopeptide_repeat	387	419
IPR002885	Pentatricopeptide_repeat	186	214
IPR002885	Pentatricopeptide_repeat	151	176
IPR002885	Pentatricopeptide_repeat	496	545
IPR002885	Pentatricopeptide_repeat	426	475
IPR002885	Pentatricopeptide_repeat	584	633
IPR002885	Pentatricopeptide_repeat	322	370
IPR002885	Pentatricopeptide_repeat	216	265

External Links

No external refs found!