Gb_08105

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 303.0)

Gene families : OG0000364 (Archaeplastida) Phylogenetic Tree(s): OG0000364_tree ,
OG_05_0000134 (LandPlants) Phylogenetic Tree(s): OG_05_0000134_tree ,
OG_06_0000108 (SeedPlants) Phylogenetic Tree(s): OG_06_0000108_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_08105
Cluster	HCCA: Cluster_275

Target	Alias	Description	ECC score	Gene Family Method
Gb_02052	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.1	Archaeplastida
Gb_05523	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.02	Archaeplastida
Gb_09514	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.06	Archaeplastida
Gb_13320	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.06	Archaeplastida
Gb_15074	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.08	Archaeplastida
Gb_16739	No alias	no hits & (original description: none)	0.06	Archaeplastida
Gb_21118	No alias	no hits & (original description: none)	0.09	Archaeplastida
Gb_21972	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.03	Archaeplastida
Gb_22414	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.04	Archaeplastida
Gb_26666	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.2	Archaeplastida
Gb_26759	No alias	no hits & (original description: none)	0.08	Archaeplastida
Gb_26878	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.02	Archaeplastida
Gb_27233	No alias	no hits & (original description: none)	0.04	Archaeplastida
Gb_28622	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.06	Archaeplastida
Gb_30261	No alias	no hits & (original description: none)	0.01	Archaeplastida
Gb_34085	No alias	no hits & (original description: none)	0.08	Archaeplastida
Gb_34975	No alias	no hits & (original description: none)	0.02	Archaeplastida
Gb_38136	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.11	Archaeplastida
Gb_41697	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.02	Archaeplastida
Pp3c12_7790V3.1	No alias	Polynucleotidyl transferase, ribonuclease H-like...	0.02	Archaeplastida
Pp3c2_13220V3.1	No alias	No annotation	0.01	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001584	Integrase_cat-core	181	295
IPR025724	GAG-pre-integrase_dom	113	167

External Links

No external refs found!

Gb_08105

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation