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  5. Gb_08277

Gb_08277


Description : component LSm2 of U6-associated LSm accessory ribonucleoprotein complex


Gene families : OG0003406 (Archaeplastida) Phylogenetic Tree(s): OG0003406_tree ,
OG_05_0008218 (LandPlants) Phylogenetic Tree(s): OG_05_0008218_tree ,
OG_06_0010664 (SeedPlants) Phylogenetic Tree(s): OG_06_0010664_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_08277
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00112530 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U6-associated LSm accessory... 0.06 Archaeplastida
GSVIVT01011077001 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.04 Archaeplastida
Pp3c2_19710V3.1 No alias Small nuclear ribonucleoprotein family protein 0.01 Archaeplastida
Solyc09g072970.3.1 No alias component LSm2 of U6-associated LSm accessory... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000814 ESCRT II complex IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
CC GO:0036452 ESCRT complex IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044440 endosomal part IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0071985 multivesicular body sorting pathway IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 7 71
No external refs found!