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  5. Gb_08772

Gb_08772


Description : Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana (sp|q7y211|pp285_arath : 692.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_08772
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01012461001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
GSVIVT01033735001 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.04 Archaeplastida
Gb_02065 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_03691 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.05 Archaeplastida
Gb_06523 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.06 Archaeplastida
Gb_07290 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 Archaeplastida
Gb_11389 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_19693 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.07 Archaeplastida
Gb_19828 No alias RNA editing factor (OTP82) 0.05 Archaeplastida
Gb_36433 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.07 Archaeplastida
Gb_40047 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_40766 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
LOC_Os02g53050.1 No alias RNA editing factor (CLB19) 0.03 Archaeplastida
LOC_Os04g02850.1 No alias RNA editing factor (OTP84) 0.03 Archaeplastida
MA_10138132g0010 No alias Pentatricopeptide repeat-containing protein At3g02330,... 0.04 Archaeplastida
MA_10431227g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
MA_104937g0010 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.05 Archaeplastida
MA_123466g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
MA_135075g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.06 Archaeplastida
MA_175623g0010 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.08 Archaeplastida
MA_20622g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_3471g0010 No alias RNA editing factor (MEF19) 0.03 Archaeplastida
MA_6329g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
MA_81514g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
MA_90090g0010 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.03 Archaeplastida
MA_9526611g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Smo128850 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
Smo328 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
Smo428483 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
Smo77426 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Smo94945 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
Solyc03g114660.1.1 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.05 Archaeplastida
Zm00001e000301_P001 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.02 Archaeplastida
Zm00001e002552_P001 No alias RNA editing factor (SEL1/PDM1) 0.02 Archaeplastida
Zm00001e029119_P001 No alias Pentatricopeptide repeat-containing protein At2g33760... 0.04 Archaeplastida
Zm00001e031351_P001 No alias RNA editing factor (ECD1) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 638 662
IPR002885 Pentatricopeptide_repeat 564 611
IPR002885 Pentatricopeptide_repeat 463 511
IPR002885 Pentatricopeptide_repeat 362 403
IPR002885 Pentatricopeptide_repeat 261 308
IPR002885 Pentatricopeptide_repeat 160 207
IPR032867 DYW_dom 737 861
No external refs found!