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  5. Gb_08958

Gb_08958


Description : Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana (sp|q9fnl2|pp418_arath : 434.0)


Gene families : OG0000198 (Archaeplastida) Phylogenetic Tree(s): OG0000198_tree ,
OG_05_0000086 (LandPlants) Phylogenetic Tree(s): OG_05_0000086_tree ,
OG_06_0005495 (SeedPlants) Phylogenetic Tree(s): OG_06_0005495_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_08958
Cluster HCCA: Cluster_262

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00259780 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AMTR_s00015p00258950 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16420,... 0.03 Archaeplastida
AMTR_s00022p00130870 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g14580,... 0.02 Archaeplastida
AMTR_s00024p00204830 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g39710... 0.03 Archaeplastida
AT3G09060 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT4G01400 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.03 Archaeplastida
GSVIVT01011280001 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.03 Archaeplastida
GSVIVT01024665001 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.04 Archaeplastida
LOC_Os01g48140.1 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.02 Archaeplastida
Mp3g05190.1 No alias Pentatricopeptide repeat-containing protein At1g62930,... 0.01 Archaeplastida
Solyc11g073230.1.1 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.04 Archaeplastida
Zm00001e011589_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e027557_P001 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 187 220
IPR002885 Pentatricopeptide_repeat 54 81
IPR002885 Pentatricopeptide_repeat 228 275
IPR002885 Pentatricopeptide_repeat 122 169
IPR002885 Pentatricopeptide_repeat 296 345
IPR002885 Pentatricopeptide_repeat 380 422
No external refs found!