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  5. Gb_09416

Gb_09416


Description : Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana (sp|q9ltv8|pp224_arath : 470.0)


Gene families : OG0014642 (Archaeplastida) Phylogenetic Tree(s): OG0014642_tree ,
OG_05_0064684 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0058258 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_09416

Target Alias Description ECC score Gene Family Method Actions
Gb_08618 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Smo108325 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.1 Archaeplastida
Smo85926 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 477 504
IPR002885 Pentatricopeptide_repeat 514 537
IPR002885 Pentatricopeptide_repeat 224 270
IPR002885 Pentatricopeptide_repeat 123 171
IPR002885 Pentatricopeptide_repeat 325 371
IPR002885 Pentatricopeptide_repeat 425 464
No external refs found!