AT2G24260 (LRL1)

Aliases : LRL1

Description : LJRHL1-like 1

Gene families : OG0000051 (Archaeplastida) Phylogenetic Tree(s): OG0000051_tree ,
OG_05_0000521 (LandPlants) Phylogenetic Tree(s): OG_05_0000521_tree ,
OG_06_0000874 (SeedPlants) Phylogenetic Tree(s): OG_06_0000874_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G24260
Cluster	HCCA: Cluster_191

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00228970	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.bHLH...	0.02	Archaeplastida
GSVIVT01008299001	No alias	External stimuli response.light.UV-A/blue...	0.04	Archaeplastida
GSVIVT01031020001	No alias	External stimuli response.light.UV-A/blue...	0.04	Archaeplastida
GSVIVT01032055001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	Archaeplastida
LOC_Os06g08500.1	No alias	transcription factor (bHLH)	0.02	Archaeplastida
LOC_Os09g33580.2	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	Archaeplastida
MA_158362g0010	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.02	Archaeplastida
Smo425336	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	Archaeplastida
Solyc04g005220.3.1	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.04	Archaeplastida
Solyc09g065820.4.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Solyc09g083220.3.1	No alias	transcription factor (bHLH)	0.05	Archaeplastida
Solyc09g097870.4.1	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.05	Archaeplastida
Zm00001e023327_P001	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0048468	cell development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080147	root hair cell development	IMP	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000162	tryptophan biosynthetic process	IEP	Neighborhood
BP	GO:0002238	response to molecule of fungal origin	IEP	Neighborhood
MF	GO:0004834	tryptophan synthase activity	IEP	Neighborhood
BP	GO:0006568	tryptophan metabolic process	IEP	Neighborhood
BP	GO:0006586	indolalkylamine metabolic process	IEP	Neighborhood
BP	GO:0006623	protein targeting to vacuole	IEP	Neighborhood
BP	GO:0006914	autophagy	IEP	Neighborhood
BP	GO:0007033	vacuole organization	IEP	Neighborhood
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	Neighborhood
BP	GO:0009309	amine biosynthetic process	IEP	Neighborhood
BP	GO:0016192	vesicle-mediated transport	IEP	Neighborhood
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Neighborhood
MF	GO:0016836	hydro-lyase activity	IEP	Neighborhood
BP	GO:0042401	cellular biogenic amine biosynthetic process	IEP	Neighborhood
MF	GO:0042803	protein homodimerization activity	IEP	Neighborhood
BP	GO:0046219	indolalkylamine biosynthetic process	IEP	Neighborhood
MF	GO:0046983	protein dimerization activity	IEP	Neighborhood
MF	GO:0052684	L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity	IEP	Neighborhood
BP	GO:0061919	process utilizing autophagic mechanism	IEP	Neighborhood
BP	GO:0072665	protein localization to vacuole	IEP	Neighborhood
BP	GO:0072666	establishment of protein localization to vacuole	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	149	194

External Links

No external refs found!

AT2G24260 (LRL1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation