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  5. AT2G24590

AT2G24590 (At-RSZ22a, RSZ22a)


Aliases : At-RSZ22a, RSZ22a

Description : RNA recognition motif and CCHC-type zinc finger domains containing protein


Gene families : OG0002592 (Archaeplastida) Phylogenetic Tree(s): OG0002592_tree ,
OG_05_0002271 (LandPlants) Phylogenetic Tree(s): OG_05_0002271_tree ,
OG_06_0002305 (SeedPlants) Phylogenetic Tree(s): OG_06_0002305_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G24590
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00088p00022360 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome-associated... 0.02 Archaeplastida
Cre09.g408200 No alias RNA processing.RNA splicing.spliceosome-associated... 0.04 Archaeplastida
GSVIVT01033172001 No alias RNA processing.RNA splicing.spliceosome-associated... 0.04 Archaeplastida
LOC_Os02g54770.2 No alias RSZ21/22 RNA splicing factor 0.05 Archaeplastida
MA_10435943g0010 No alias RSZ21/22 RNA splicing factor 0.02 Archaeplastida
Mp5g16020.1 No alias RSZ21/22 RNA splicing factor 0.03 Archaeplastida
Pp3c7_5100V3.1 No alias serine/arginine-rich 22 0.04 Archaeplastida
Zm00001e015077_P001 No alias RSZ21/22 RNA splicing factor 0.05 Archaeplastida
Zm00001e016090_P001 No alias RSZ21/22 RNA splicing factor 0.08 Archaeplastida
Zm00001e022939_P001 No alias RSZ21/22 RNA splicing factor 0.06 Archaeplastida
Zm00001e023726_P001 No alias RSZ21/22 RNA splicing factor 0.09 Archaeplastida
Zm00001e036288_P001 No alias RSZ21/22 RNA splicing factor 0.04 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome RCA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005730 nucleolus IDA Interproscan
CC GO:0005829 cytosol IDA Interproscan
BP GO:0008380 RNA splicing NAS Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003727 single-stranded RNA binding IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005675 transcription factor TFIIH holo complex IEP Neighborhood
BP GO:0006289 nucleotide-excision repair IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006366 transcription by RNA polymerase II IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
MF GO:0008143 poly(A) binding IEP Neighborhood
BP GO:0009266 response to temperature stimulus IEP Neighborhood
BP GO:0009269 response to desiccation IEP Neighborhood
BP GO:0009409 response to cold IEP Neighborhood
BP GO:0009414 response to water deprivation IEP Neighborhood
BP GO:0009415 response to water IEP Neighborhood
BP GO:0009628 response to abiotic stimulus IEP Neighborhood
BP GO:0009631 cold acclimation IEP Neighborhood
CC GO:0016604 nuclear body IEP Neighborhood
CC GO:0016607 nuclear speck IEP Neighborhood
BP GO:0032392 DNA geometric change IEP Neighborhood
BP GO:0032508 DNA duplex unwinding IEP Neighborhood
CC GO:0032806 carboxy-terminal domain protein kinase complex IEP Neighborhood
BP GO:0043457 regulation of cellular respiration IEP Neighborhood
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0048316 seed development IEP Neighborhood
BP GO:0048443 stamen development IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0070717 poly-purine tract binding IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1902554 serine/threonine protein kinase complex IEP Neighborhood
CC GO:1902911 protein kinase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 97 112
IPR000504 RRM_dom 4 61
No external refs found!