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  5. Gb_10088

Gb_10088


Description : component IDM1 of ROS1-recruitment complex. PHD finger transcription factor


Gene families : OG0000311 (Archaeplastida) Phylogenetic Tree(s): OG0000311_tree ,
OG_05_0001053 (LandPlants) Phylogenetic Tree(s): OG_05_0001053_tree ,
OG_06_0000517 (SeedPlants) Phylogenetic Tree(s): OG_06_0000517_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_10088
Cluster HCCA: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01014219001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.04 Archaeplastida
GSVIVT01017972001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.02 Archaeplastida
Pp3c7_8630V3.1 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.05 Archaeplastida
Solyc03g071550.3.1 No alias PHD finger transcription factor 0.03 Archaeplastida
Solyc06g082040.2.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e008083_P001 No alias component IDM1 of ROS1-recruitment complex. PHD finger... 0.05 Archaeplastida
Zm00001e012046_P003 No alias PHD finger transcription factor 0.02 Archaeplastida
Zm00001e013368_P001 No alias PHD finger transcription factor 0.02 Archaeplastida
Zm00001e036733_P001 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004576 oligosaccharyl transferase activity IEP Neighborhood
MF GO:0005049 nuclear export signal receptor activity IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
MF GO:0140142 nucleocytoplasmic carrier activity IEP Neighborhood
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 1530 1571
IPR032308 Jas 1418 1489
No external refs found!