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  5. Gb_10615

Gb_10615


Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana (sp|q9sy02|pp301_arath : 764.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0061657 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0054984 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_10615
Cluster HCCA: Cluster_231

Target Alias Description ECC score Gene Family Method Actions
MA_10431227g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
MA_104937g0010 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.05 Archaeplastida
MA_110g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_123466g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
MA_135075g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_16823g0010 No alias RNA editing factor (MEF19) 0.03 Archaeplastida
MA_20622g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
MA_322292g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.06 Archaeplastida
MA_3471g0010 No alias RNA editing factor (MEF19) 0.03 Archaeplastida
MA_41676g0020 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.04 Archaeplastida
MA_49545g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
MA_66417g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
MA_81514g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_835083g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
MA_83898g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
MA_90090g0010 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.03 Archaeplastida
MA_9526611g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_98224g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Smo428483 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.07 Archaeplastida
Smo77426 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Smo94945 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 311 335
IPR002885 Pentatricopeptide_repeat 81 111
IPR002885 Pentatricopeptide_repeat 337 366
IPR002885 Pentatricopeptide_repeat 112 141
IPR002885 Pentatricopeptide_repeat 205 233
IPR002885 Pentatricopeptide_repeat 701 729
IPR002885 Pentatricopeptide_repeat 368 398
IPR002885 Pentatricopeptide_repeat 50 80
IPR002885 Pentatricopeptide_repeat 399 428
IPR002885 Pentatricopeptide_repeat 635 658
IPR032867 DYW_dom 733 856
IPR002885 Pentatricopeptide_repeat 171 204
IPR002885 Pentatricopeptide_repeat 458 507
IPR002885 Pentatricopeptide_repeat 234 281
IPR002885 Pentatricopeptide_repeat 560 606
No external refs found!