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  5. Gb_10677

Gb_10677


Description : component HAF/TAF1 of SAGA transcription co-activator complex. component HAF/TAF1 of TFIId basal transcription regulation complex. protein kinase (TAF)


Gene families : OG0002996 (Archaeplastida) Phylogenetic Tree(s): OG0002996_tree ,
OG_05_0003348 (LandPlants) Phylogenetic Tree(s): OG_05_0003348_tree ,
OG_06_0005183 (SeedPlants) Phylogenetic Tree(s): OG_06_0005183_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_10677
Cluster HCCA: Cluster_328

Target Alias Description ECC score Gene Family Method Actions
AT1G32750 HAF01, HAC13,... HAC13 protein (HAC13) 0.07 Archaeplastida
Cpa|evm.model.tig00020903.20 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.01 Archaeplastida
Cre10.g425501 No alias Transcription initiation factor TFIID subunit 1 OS=Oryza... 0.04 Archaeplastida
Mp5g22790.1 No alias component HAF/TAF1 of SAGA transcription co-activator... 0.18 Archaeplastida
Pp3c10_350V3.1 No alias HAC13 protein (HAC13) 0.06 Archaeplastida
Pp3c14_1870V3.1 No alias HAC13 protein (HAC13) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001487 Bromodomain 1822 1898
IPR022591 TFIID_sub1_DUF3591 591 1161
IPR009067 TAF_II_230-bd 20 65
IPR000626 Ubiquitin_dom 676 746
No external refs found!