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  5. AT2G25370

AT2G25370


Description : RING/U-box superfamily protein


Gene families : OG0000316 (Archaeplastida) Phylogenetic Tree(s): OG0000316_tree ,
OG_05_0004760 (LandPlants) Phylogenetic Tree(s): OG_05_0004760_tree ,
OG_06_0003098 (SeedPlants) Phylogenetic Tree(s): OG_06_0003098_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G25370
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
AT2G16520 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.11 Archaeplastida
AT2G21420 No alias IBR domain containing protein 0.03 Archaeplastida
AT2G22940 No alias BEST Arabidopsis thaliana protein match is: zinc finger... 0.04 Archaeplastida
AT2G25360 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT2G26135 No alias RING/U-box protein with C6HC-type zinc finger 0.06 Archaeplastida
AT3G43750 No alias RING/U-box protein with C6HC-type zinc finger domain 0.03 Archaeplastida
AT3G45460 No alias IBR domain containing protein 0.12 Archaeplastida
AT3G45480 No alias RING/U-box protein with C6HC-type zinc finger 0.13 Archaeplastida
AT3G45500 No alias BEST Arabidopsis thaliana protein match is: RING/U-box... 0.1 Archaeplastida
AT3G45540 No alias RING/U-box protein with C6HC-type zinc finger 0.09 Archaeplastida
AT3G45560 No alias zinc finger (C3HC4-type RING finger) family protein 0.11 Archaeplastida
AT3G45570 No alias RING/U-box protein with C6HC-type zinc finger domain 0.13 Archaeplastida
AT3G53690 No alias RING/U-box superfamily protein 0.08 Archaeplastida
Solyc01g110080.2.1 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.02 Archaeplastida
Solyc01g110090.1.1 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm ISM Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003993 acid phosphatase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004565 beta-galactosidase activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0004722 protein serine/threonine phosphatase activity IEP Neighborhood
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
BP GO:0006071 glycerol metabolic process IEP Neighborhood
BP GO:0006643 membrane lipid metabolic process IEP Neighborhood
BP GO:0006664 glycolipid metabolic process IEP Neighborhood
BP GO:0006817 phosphate ion transport IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008889 glycerophosphodiester phosphodiesterase activity IEP Neighborhood
BP GO:0009247 glycolipid biosynthetic process IEP Neighborhood
MF GO:0015925 galactosidase activity IEP Neighborhood
BP GO:0016036 cellular response to phosphate starvation IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016791 phosphatase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
BP GO:0019374 galactolipid metabolic process IEP Neighborhood
BP GO:0019375 galactolipid biosynthetic process IEP Neighborhood
BP GO:0019400 alditol metabolic process IEP Neighborhood
MF GO:0042578 phosphoric ester hydrolase activity IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0046467 membrane lipid biosynthetic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:1903509 liposaccharide metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002867 IBR_dom 452 499
IPR002867 IBR_dom 372 435
IPR002156 RNaseH_domain 173 288
No external refs found!