Gb_10887

Description : transcription factor (KNOX)

Gene families : OG0000263 (Archaeplastida) Phylogenetic Tree(s): OG0000263_tree ,
OG_05_0000128 (LandPlants) Phylogenetic Tree(s): OG_05_0000128_tree ,
OG_06_0000802 (SeedPlants) Phylogenetic Tree(s): OG_06_0000802_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_10887
Cluster	HCCA: Cluster_169

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00045p00169620	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HB...	0.02	Archaeplastida
AMTR_s00085p00165180	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HB...	0.02	Archaeplastida
AT1G23380	KNAT6, KNAT6L, KNAT6S	KNOTTED1-like homeobox gene 6	0.04	Archaeplastida
AT1G70510	KNAT2, ATK1	KNOTTED-like from Arabidopsis thaliana 2	0.04	Archaeplastida
AT4G08150	BP, BP1, KNAT1	KNOTTED-like from Arabidopsis thaliana	0.04	Archaeplastida
AT5G25220	KNAT3	KNOTTED1-like homeobox gene 3	0.03	Archaeplastida
GSVIVT01004811001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.05	Archaeplastida
GSVIVT01007715001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.03	Archaeplastida
GSVIVT01009273001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.04	Archaeplastida
GSVIVT01012897001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.03	Archaeplastida
GSVIVT01013790001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.06	Archaeplastida
GSVIVT01030488001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.04	Archaeplastida
GSVIVT01031241001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.05	Archaeplastida
LOC_Os01g19694.1	No alias	transcription factor (KNOX)	0.02	Archaeplastida
LOC_Os03g03164.2	No alias	transcription factor (KNOX)	0.02	Archaeplastida
LOC_Os03g51710.1	No alias	transcription factor (KNOX)	0.03	Archaeplastida
LOC_Os03g56140.1	No alias	transcription factor (KNOX)	0.02	Archaeplastida
LOC_Os05g03884.1	No alias	transcription factor (KNOX)	0.04	Archaeplastida
Smo417475	No alias	No description available	0.02	Archaeplastida
Solyc04g077210.3.1	No alias	transcription factor (KNOX)	0.04	Archaeplastida
Solyc05g005090.4.1	No alias	transcription factor (KNOX)	0.02	Archaeplastida
Zm00001e005545_P001	No alias	transcription factor (KNOX)	0.03	Archaeplastida
Zm00001e005547_P001	No alias	transcription factor (KNOX)	0.03	Archaeplastida
Zm00001e011538_P001	No alias	transcription factor (KNOX)	0.05	Archaeplastida
Zm00001e017489_P001	No alias	transcription factor (KNOX)	0.04	Archaeplastida
Zm00001e027562_P001	No alias	transcription factor (KNOX)	0.04	Archaeplastida
Zm00001e029453_P001	No alias	transcription factor (KNOX)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	Neighborhood
MF	GO:0004427	inorganic diphosphatase activity	IEP	Neighborhood
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Neighborhood
MF	GO:0004650	polygalacturonase activity	IEP	Neighborhood
MF	GO:0004673	protein histidine kinase activity	IEP	Neighborhood
BP	GO:0005975	carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0006081	cellular aldehyde metabolic process	IEP	Neighborhood
BP	GO:0008654	phospholipid biosynthetic process	IEP	Neighborhood
BP	GO:0009240	isopentenyl diphosphate biosynthetic process	IEP	Neighborhood
MF	GO:0009678	hydrogen-translocating pyrophosphatase activity	IEP	Neighborhood
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	IEP	Neighborhood
MF	GO:0016726	oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor	IEP	Neighborhood
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	Neighborhood
MF	GO:0016787	hydrolase activity	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
BP	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	IEP	Neighborhood
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	IEP	Neighborhood
MF	GO:0033926	glycopeptide alpha-N-acetylgalactosaminidase activity	IEP	Neighborhood
BP	GO:0046490	isopentenyl diphosphate metabolic process	IEP	Neighborhood
BP	GO:0050992	dimethylallyl diphosphate biosynthetic process	IEP	Neighborhood
BP	GO:0050993	dimethylallyl diphosphate metabolic process	IEP	Neighborhood
MF	GO:0051745	4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	IEP	Neighborhood
MF	GO:0140103	catalytic activity, acting on a glycoprotein	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR008422	Homeobox_KN_domain	54	93
IPR005539	ELK_dom	14	35

External Links

No external refs found!

Gb_10887

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation