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  5. AT2G25565

AT2G25565


Description : BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT2G24480.1); Has 27 Blast hits to 27 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).


Gene families : OG0011538 (Archaeplastida) Phylogenetic Tree(s): OG0011538_tree ,
OG_05_0012894 (LandPlants) Phylogenetic Tree(s): OG_05_0012894_tree ,
OG_06_0012922 (SeedPlants) Phylogenetic Tree(s): OG_06_0012922_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G25565
Cluster HCCA: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
AT3G28620 No alias Zinc finger, C3HC4 type (RING finger) family protein 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005575 cellular_component ND Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003979 UDP-glucose 6-dehydrogenase activity IEP Neighborhood
MF GO:0004557 alpha-galactosidase activity IEP Neighborhood
MF GO:0004725 protein tyrosine phosphatase activity IEP Neighborhood
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005740 mitochondrial envelope IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006065 UDP-glucuronate biosynthetic process IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006672 ceramide metabolic process IEP Neighborhood
BP GO:0006677 glycosylceramide metabolic process IEP Neighborhood
BP GO:0006687 glycosphingolipid metabolic process IEP Neighborhood
MF GO:0008131 primary amine oxidase activity IEP Neighborhood
BP GO:0008219 cell death IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0009741 response to brassinosteroid IEP Neighborhood
BP GO:0009806 lignan metabolic process IEP Neighborhood
BP GO:0009807 lignan biosynthetic process IEP Neighborhood
BP GO:0009888 tissue development IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
MF GO:0009916 alternative oxidase activity IEP Neighborhood
BP GO:0010014 meristem initiation IEP Neighborhood
BP GO:0010087 phloem or xylem histogenesis IEP Neighborhood
BP GO:0010089 xylem development IEP Neighborhood
BP GO:0010230 alternative respiration IEP Neighborhood
BP GO:0010371 regulation of gibberellin biosynthetic process IEP Neighborhood
BP GO:0010383 cell wall polysaccharide metabolic process IEP Neighborhood
BP GO:0010393 galacturonan metabolic process IEP Neighborhood
BP GO:0010410 hemicellulose metabolic process IEP Neighborhood
BP GO:0010413 glucuronoxylan metabolic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010623 programmed cell death involved in cell development IEP Neighborhood
BP GO:0012501 programmed cell death IEP Neighborhood
BP GO:0014070 response to organic cyclic compound IEP Neighborhood
BP GO:0016051 carbohydrate biosynthetic process IEP Neighborhood
BP GO:0016137 glycoside metabolic process IEP Neighborhood
BP GO:0016139 glycoside catabolic process IEP Neighborhood
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Neighborhood
MF GO:0017040 N-acylsphingosine amidohydrolase activity IEP Neighborhood
MF GO:0017048 Rho GTPase binding IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019377 glycolipid catabolic process IEP Neighborhood
BP GO:0019747 regulation of isoprenoid metabolic process IEP Neighborhood
BP GO:0030149 sphingolipid catabolic process IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0032881 regulation of polysaccharide metabolic process IEP Neighborhood
BP GO:0032885 regulation of polysaccharide biosynthetic process IEP Neighborhood
MF GO:0033549 MAP kinase phosphatase activity IEP Neighborhood
MF GO:0033550 MAP kinase tyrosine phosphatase activity IEP Neighborhood
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Neighborhood
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0042546 cell wall biogenesis IEP Neighborhood
BP GO:0043405 regulation of MAP kinase activity IEP Neighborhood
BP GO:0043407 negative regulation of MAP kinase activity IEP Neighborhood
BP GO:0043408 regulation of MAPK cascade IEP Neighborhood
BP GO:0043409 negative regulation of MAPK cascade IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0044038 cell wall macromolecule biosynthetic process IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
CC GO:0045298 tubulin complex IEP Neighborhood
BP GO:0045488 pectin metabolic process IEP Neighborhood
BP GO:0045491 xylan metabolic process IEP Neighborhood
BP GO:0045492 xylan biosynthetic process IEP Neighborhood
BP GO:0046398 UDP-glucuronate metabolic process IEP Neighborhood
BP GO:0046466 membrane lipid catabolic process IEP Neighborhood
BP GO:0046477 glycosylceramide catabolic process IEP Neighborhood
BP GO:0046479 glycosphingolipid catabolic process IEP Neighborhood
BP GO:0046514 ceramide catabolic process IEP Neighborhood
BP GO:0048658 anther wall tapetum development IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0055046 microgametogenesis IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0070589 cellular component macromolecule biosynthetic process IEP Neighborhood
BP GO:0070592 cell wall polysaccharide biosynthetic process IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0080147 root hair cell development IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1900030 regulation of pectin biosynthetic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2000652 regulation of secondary cell wall biogenesis IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!