- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana (sp|q9sit7|pp151_arath : 418.0)
Gene families : OG0009648 (Archaeplastida) Phylogenetic Tree(s): OG0009648_tree ,
OG_05_0056857 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0049801 (SeedPlants) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Gb_11036 | |
| Cluster | HCCA: Cluster_257 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Gb_08968 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.05 | Archaeplastida | |
| Gb_21046 | No alias | Pentatricopeptide repeat-containing protein At1g11290,... | 0.04 | Archaeplastida | |
| Gb_31319 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.06 | Archaeplastida | |
| Gb_33134 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.05 | Archaeplastida | |
| MA_10090072g0010 | No alias | Pentatricopeptide repeat-containing protein At1g11290,... | 0.05 | Archaeplastida | |
| MA_318389g0010 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.05 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
| MF | GO:0043167 | ion binding | IEP | Neighborhood |
| MF | GO:0043169 | cation binding | IEP | Neighborhood |
| MF | GO:0046872 | metal ion binding | IEP | Neighborhood |
| MF | GO:0046914 | transition metal ion binding | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 516 | 540 |
| IPR002885 | Pentatricopeptide_repeat | 416 | 441 |
| IPR002885 | Pentatricopeptide_repeat | 240 | 288 |
| IPR002885 | Pentatricopeptide_repeat | 341 | 388 |
| IPR002885 | Pentatricopeptide_repeat | 442 | 490 |
| IPR002885 | Pentatricopeptide_repeat | 142 | 189 |
| IPR002885 | Pentatricopeptide_repeat | 298 | 340 |
| No external refs found! |