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Description : RNA editing factor (CRR21)
Gene families : OG0008686 (Archaeplastida) Phylogenetic Tree(s): OG0008686_tree ,
OG_05_0056856 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0049800 (SeedPlants) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Gb_11039 | |
| Cluster | HCCA: Cluster_125 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Gb_21016 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.09 | Archaeplastida | |
| Gb_27291 | No alias | Pentatricopeptide repeat-containing protein At2g22070... | 0.06 | Archaeplastida | |
| MA_129805g0010 | No alias | Pentatricopeptide repeat-containing protein At4g39530... | 0.03 | Archaeplastida | |
| MA_130999g0010 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.03 | Archaeplastida | |
| MA_137736g0010 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.06 | Archaeplastida | |
| MA_140985g0010 | No alias | Pentatricopeptide repeat-containing protein At2g13600... | 0.03 | Archaeplastida | |
| MA_820066g0010 | No alias | Pentatricopeptide repeat-containing protein At2g13600... | 0.04 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
| MF | GO:0043167 | ion binding | IEP | Neighborhood |
| MF | GO:0043169 | cation binding | IEP | Neighborhood |
| MF | GO:0046872 | metal ion binding | IEP | Neighborhood |
| MF | GO:0046914 | transition metal ion binding | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 341 | 388 |
| IPR002885 | Pentatricopeptide_repeat | 139 | 186 |
| IPR002885 | Pentatricopeptide_repeat | 240 | 287 |
| IPR002885 | Pentatricopeptide_repeat | 605 | 653 |
| IPR002885 | Pentatricopeptide_repeat | 503 | 551 |
| IPR002885 | Pentatricopeptide_repeat | 472 | 501 |
| IPR002885 | Pentatricopeptide_repeat | 416 | 441 |
| IPR002885 | Pentatricopeptide_repeat | 444 | 469 |
| IPR002885 | Pentatricopeptide_repeat | 679 | 703 |
| IPR002885 | Pentatricopeptide_repeat | 197 | 239 |
| No external refs found! |