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  5. Gb_11328

Gb_11328


Description : plastidial mRNA processing factor (CRP1)


Gene families : OG0007267 (Archaeplastida) Phylogenetic Tree(s): OG0007267_tree ,
OG_05_0005245 (LandPlants) Phylogenetic Tree(s): OG_05_0005245_tree ,
OG_06_0009021 (SeedPlants) Phylogenetic Tree(s): OG_06_0009021_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_11328
Cluster HCCA: Cluster_302

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00069110 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g42310,... 0.03 Archaeplastida
AT5G42310 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Archaeplastida
GSVIVT01013362001 No alias Pentatricopeptide repeat-containing protein At5g42310,... 0.06 Archaeplastida
LOC_Os07g36390.1 No alias plastidial mRNA processing factor (CRP1) 0.03 Archaeplastida
MA_65267g0010 No alias plastidial mRNA processing factor (CRP1) 0.02 Archaeplastida
Mp5g09810.1 No alias plastidial mRNA processing factor (CRP1) 0.05 Archaeplastida
Smo135281 No alias Pentatricopeptide repeat-containing protein At5g42310,... 0.03 Archaeplastida
Zm00001e035192_P001 No alias plastidial mRNA processing factor (CRP1) 0.1 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006353 DNA-templated transcription, termination IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0015994 chlorophyll metabolic process IEP Neighborhood
BP GO:0015995 chlorophyll biosynthetic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0035596 methylthiotransferase activity IEP Neighborhood
BP GO:0042440 pigment metabolic process IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0046148 pigment biosynthetic process IEP Neighborhood
MF GO:0046406 magnesium protoporphyrin IX methyltransferase activity IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0050497 transferase activity, transferring alkylthio groups IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 321 368
IPR002885 Pentatricopeptide_repeat 183 228
IPR002885 Pentatricopeptide_repeat 461 508
IPR002885 Pentatricopeptide_repeat 380 440
IPR002885 Pentatricopeptide_repeat 239 300
IPR002885 Pentatricopeptide_repeat 522 579
IPR002885 Pentatricopeptide_repeat 149 177
No external refs found!