AT2G25930 (ELF3, PYK20)

Aliases : ELF3, PYK20

Description : hydroxyproline-rich glycoprotein family protein

Gene families : OG0003560 (Archaeplastida) Phylogenetic Tree(s): OG0003560_tree ,
OG_05_0002725 (LandPlants) Phylogenetic Tree(s): OG_05_0002725_tree ,
OG_06_0003481 (SeedPlants) Phylogenetic Tree(s): OG_06_0003481_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G25930
Cluster	HCCA: Cluster_254

Target	Alias	Description	ECC score	Gene Family Method
Gb_05973	No alias	transcription factor (ELF3)	0.04	Archaeplastida
Gb_27015	No alias	transcription factor (ELF3). component ELF3 of circadian...	0.04	Archaeplastida
Mp1g10870.1	No alias	transcription factor (ELF3). component ELF3 of circadian...	0.03	Archaeplastida
Zm00001e032561_P002	No alias	transcription factor (ELF3). component ELF3 of circadian...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0001101	response to acid chemical	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007602	phototransduction	None	Extended
BP	GO:0007623	circadian rhythm	IMP	Interproscan
BP	GO:0007623	circadian rhythm	RCA	Interproscan
MF	GO:0008022	protein C-terminus binding	IPI	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009409	response to cold	IEP	Interproscan
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009581	detection of external stimulus	None	Extended
BP	GO:0009582	detection of abiotic stimulus	None	Extended
BP	GO:0009583	detection of light stimulus	None	Extended
BP	GO:0009585	red, far-red light phototransduction	IMP	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009648	photoperiodism	None	Extended
BP	GO:0009649	entrainment of circadian clock	IMP	Interproscan
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009733	response to auxin	IEP	Interproscan
BP	GO:0009737	response to abscisic acid	IEP	Interproscan
BP	GO:0009826	unidimensional cell growth	IMP	Interproscan
BP	GO:0009909	regulation of flower development	IMP	Interproscan
BP	GO:0009909	regulation of flower development	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010031	circumnutation	IMP	Interproscan
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010119	regulation of stomatal movement	IMP	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032989	cellular component morphogenesis	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042752	regulation of circadian rhythm	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0048511	rhythmic process	None	Extended
BP	GO:0048573	photoperiodism, flowering	IMP	Interproscan
BP	GO:0048573	photoperiodism, flowering	RCA	Interproscan
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050879	multicellular organismal movement	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051606	detection of stimulus	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000156	phosphorelay response regulator activity	IEP	Neighborhood
MF	GO:0000822	inositol hexakisphosphate binding	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003712	transcription coregulator activity	IEP	Neighborhood
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Neighborhood
MF	GO:0004888	transmembrane signaling receptor activity	IEP	Neighborhood
CC	GO:0005819	spindle	IEP	Neighborhood
BP	GO:0006513	protein monoubiquitination	IEP	Neighborhood
BP	GO:0006605	protein targeting	IEP	Neighborhood
BP	GO:0006625	protein targeting to peroxisome	IEP	Neighborhood
BP	GO:0006631	fatty acid metabolic process	IEP	Neighborhood
BP	GO:0006635	fatty acid beta-oxidation	IEP	Neighborhood
BP	GO:0006886	intracellular protein transport	IEP	Neighborhood
BP	GO:0006897	endocytosis	IEP	Neighborhood
BP	GO:0006970	response to osmotic stress	IEP	Neighborhood
BP	GO:0007031	peroxisome organization	IEP	Neighborhood
BP	GO:0008104	protein localization	IEP	Neighborhood
MF	GO:0008158	hedgehog receptor activity	IEP	Neighborhood
BP	GO:0009056	catabolic process	IEP	Neighborhood
BP	GO:0009057	macromolecule catabolic process	IEP	Neighborhood
BP	GO:0009062	fatty acid catabolic process	IEP	Neighborhood
BP	GO:0009651	response to salt stress	IEP	Neighborhood
BP	GO:0009723	response to ethylene	IEP	Neighborhood
BP	GO:0009734	auxin-activated signaling pathway	IEP	Neighborhood
BP	GO:0009744	response to sucrose	IEP	Neighborhood
BP	GO:0009746	response to hexose	IEP	Neighborhood
BP	GO:0009750	response to fructose	IEP	Neighborhood
MF	GO:0010011	auxin binding	IEP	Neighborhood
BP	GO:0010152	pollen maturation	IEP	Neighborhood
BP	GO:0010187	negative regulation of seed germination	IEP	Neighborhood
BP	GO:0010311	lateral root formation	IEP	Neighborhood
BP	GO:0010381	peroxisome-chloroplast membrane tethering	IEP	Neighborhood
BP	GO:0015031	protein transport	IEP	Neighborhood
BP	GO:0015833	peptide transport	IEP	Neighborhood
BP	GO:0015919	peroxisomal membrane transport	IEP	Neighborhood
BP	GO:0016042	lipid catabolic process	IEP	Neighborhood
BP	GO:0016054	organic acid catabolic process	IEP	Neighborhood
BP	GO:0016197	endosomal transport	IEP	Neighborhood
BP	GO:0016558	protein import into peroxisome matrix	IEP	Neighborhood
BP	GO:0017038	protein import	IEP	Neighborhood
CC	GO:0019005	SCF ubiquitin ligase complex	IEP	Neighborhood
BP	GO:0019395	fatty acid oxidation	IEP	Neighborhood
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Neighborhood
BP	GO:0021700	developmental maturation	IEP	Neighborhood
BP	GO:0022406	membrane docking	IEP	Neighborhood
BP	GO:0030258	lipid modification	IEP	Neighborhood
BP	GO:0032456	endocytic recycling	IEP	Neighborhood
BP	GO:0033036	macromolecule localization	IEP	Neighborhood
BP	GO:0033365	protein localization to organelle	IEP	Neighborhood
BP	GO:0034284	response to monosaccharide	IEP	Neighborhood
BP	GO:0034285	response to disaccharide	IEP	Neighborhood
BP	GO:0034440	lipid oxidation	IEP	Neighborhood
BP	GO:0034613	cellular protein localization	IEP	Neighborhood
MF	GO:0042562	hormone binding	IEP	Neighborhood
BP	GO:0042886	amide transport	IEP	Neighborhood
MF	GO:0043178	alcohol binding	IEP	Neighborhood
BP	GO:0043574	peroxisomal transport	IEP	Neighborhood
BP	GO:0044242	cellular lipid catabolic process	IEP	Neighborhood
BP	GO:0044248	cellular catabolic process	IEP	Neighborhood
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Neighborhood
BP	GO:0044282	small molecule catabolic process	IEP	Neighborhood
BP	GO:0044743	protein transmembrane import into intracellular organelle	IEP	Neighborhood
BP	GO:0045184	establishment of protein localization	IEP	Neighborhood
BP	GO:0046395	carboxylic acid catabolic process	IEP	Neighborhood
BP	GO:0046907	intracellular transport	IEP	Neighborhood
MF	GO:0046983	protein dimerization activity	IEP	Neighborhood
BP	GO:0048364	root development	IEP	Neighborhood
BP	GO:0048438	floral whorl development	IEP	Neighborhood
BP	GO:0048467	gynoecium development	IEP	Neighborhood
BP	GO:0048571	long-day photoperiodism	IEP	Neighborhood
BP	GO:0048574	long-day photoperiodism, flowering	IEP	Neighborhood
MF	GO:0051011	microtubule minus-end binding	IEP	Neighborhood
BP	GO:0051649	establishment of localization in cell	IEP	Neighborhood
BP	GO:0055085	transmembrane transport	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood
MF	GO:0060089	molecular transducer activity	IEP	Neighborhood
MF	GO:0060090	molecular adaptor activity	IEP	Neighborhood
BP	GO:0065002	intracellular protein transmembrane transport	IEP	Neighborhood
BP	GO:0070727	cellular macromolecule localization	IEP	Neighborhood
BP	GO:0071806	protein transmembrane transport	IEP	Neighborhood
BP	GO:0072329	monocarboxylic acid catabolic process	IEP	Neighborhood
BP	GO:0072594	establishment of protein localization to organelle	IEP	Neighborhood
BP	GO:0072662	protein localization to peroxisome	IEP	Neighborhood
BP	GO:0072663	establishment of protein localization to peroxisome	IEP	Neighborhood
BP	GO:0098657	import into cell	IEP	Neighborhood
BP	GO:0099402	plant organ development	IEP	Neighborhood
BP	GO:0140056	organelle localization by membrane tethering	IEP	Neighborhood
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Neighborhood
BP	GO:1901575	organic substance catabolic process	IEP	Neighborhood
BP	GO:1905393	plant organ formation	IEP	Neighborhood

No InterPro domains available for this sequence

External Links

No external refs found!

AT2G25930 (ELF3, PYK20)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation